[INFO] crate hdf5-rs 0.2.0 is already in cache [INFO] checking hdf5-rs-0.2.0 against master#783139bd8fc3b94fac9a1bf81bba2c506e8221b6 for pr-72644 [INFO] extracting crate hdf5-rs 0.2.0 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate hdf5-rs 0.2.0 on toolchain 783139bd8fc3b94fac9a1bf81bba2c506e8221b6 [INFO] running `"/workspace/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-sys from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency remutex from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0 [INFO] finished tweaking crates.io crate hdf5-rs 0.2.0 [INFO] tweaked toml for crates.io crate hdf5-rs 0.2.0 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ee2cc1be0603f41038b1309bc3e5a16b4266eee46207bd34d1450c3f40219043 [INFO] running `"docker" "start" "-a" "ee2cc1be0603f41038b1309bc3e5a16b4266eee46207bd34d1450c3f40219043"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Checking utf8-ranges v0.1.3 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Checking remutex v0.1.1 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking kernel32-sys v0.2.2 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Compiling libhdf5-lib v0.2.0 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Compiling libhdf5-sys v0.2.0 [INFO] [stderr] Compiling hdf5-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd.build_script_build.2b5nxbyd-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd.build_script_build.2b5nxbyd-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd.build_script_build.2b5nxbyd-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd.build_script_build.2b5nxbyd-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd.build_script_build.2b5nxbyd-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd" "/opt/rustwide/target/debug/build/libhdf5-sys-80b96b9c6930d6bd/build_script_build-80b96b9c6930d6bd.18f4bs5xp8mrc5ju.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-c769d89ece831e15.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-265ff16c7b6b86f9.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-e1b9e36b805e60e6.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-cad809dd31a6a599.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-8df8fedea90a4f43.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-80ea260fe87a3015.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-07193842d2b8653a.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-455fbbd57f0ec4a9.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-af3c39aa14f4a8e2.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-d9a2bda701b5264b.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-ac41f78688451395.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-0465b718f70412d8.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-428d15b56101bdc7.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-941f7f6bc622e313.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-a1755b3e88842f5d.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stderr] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: could not compile `libhdf5-sys`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42.build_script_build.2uyccgrn-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42.build_script_build.2uyccgrn-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42.build_script_build.2uyccgrn-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42.build_script_build.2uyccgrn-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42.build_script_build.2uyccgrn-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42" "/opt/rustwide/target/debug/build/hdf5-rs-4892cee61182ee42/build_script_build-4892cee61182ee42.14y6gttk4sb0vy74.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-c769d89ece831e15.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-265ff16c7b6b86f9.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-e1b9e36b805e60e6.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-cad809dd31a6a599.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-8df8fedea90a4f43.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-80ea260fe87a3015.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-07193842d2b8653a.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-455fbbd57f0ec4a9.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-af3c39aa14f4a8e2.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-d9a2bda701b5264b.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-ac41f78688451395.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-0465b718f70412d8.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-428d15b56101bdc7.rlib" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-941f7f6bc622e313.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-a1755b3e88842f5d.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stderr] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "ee2cc1be0603f41038b1309bc3e5a16b4266eee46207bd34d1450c3f40219043"` [INFO] running `"docker" "rm" "-f" "ee2cc1be0603f41038b1309bc3e5a16b4266eee46207bd34d1450c3f40219043"` [INFO] [stdout] ee2cc1be0603f41038b1309bc3e5a16b4266eee46207bd34d1450c3f40219043