[INFO] crate flann 0.1.0 is already in cache [INFO] checking flann-0.1.0 against master#783139bd8fc3b94fac9a1bf81bba2c506e8221b6 for pr-72644 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 783139bd8fc3b94fac9a1bf81bba2c506e8221b6 [INFO] running `"/workspace/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+783139bd8fc3b94fac9a1bf81bba2c506e8221b6" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 004a19f0b465b0f1c9dfc7cd00aeb3c2818fbf00fa2844cc533a266ee36af8b1 [INFO] running `"docker" "start" "-a" "004a19f0b465b0f1c9dfc7cd00aeb3c2818fbf00fa2844cc533a266ee36af8b1"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling proc-macro2 v1.0.17 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling cc v1.0.54 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking assert_approx_eq v1.1.0 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling quote v1.0.6 [INFO] [stderr] Checking backtrace v0.3.48 [INFO] [stderr] Compiling syn v1.0.29 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling synstructure v0.12.3 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-a030945ea129dc59/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-e162d8dc49715210/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-e162d8dc49715210/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-e162d8dc49715210/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55772959c7f5 - backtrace::backtrace::libunwind::trace::h678b9599e62f63eb [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55772959c7f5 - backtrace::backtrace::trace_unsynchronized::hc151481f0e2d39cd [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55772959c7f5 - std::sys_common::backtrace::_print_fmt::he1b14c2dc4d370e2 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55772959c7f5 - ::fmt::h0e056b70ceff915d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x5577295c78ec - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x557729598ad3 - std::io::Write::write_fmt::h5b95d57b9d83617e [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55772959f650 - std::sys_common::backtrace::_print::hde4f93cf630dd149 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55772959f650 - std::sys_common::backtrace::print::hab894e5c65d4445d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55772959f650 - std::panicking::default_hook::{{closure}}::h190ee58e2eec052f [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55772959f39c - std::panicking::default_hook::he2b0e031648f6bed [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55772959fc87 - std::panicking::rust_panic_with_hook::hd8d0481ab65c637b [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x55772959f88b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:388 [INFO] [stderr] 12: 0x55772959f7fb - std::panicking::begin_panic_fmt::hcee96cdfbf8d3a95 [INFO] [stderr] at src/libstd/panicking.rs:342 [INFO] [stderr] 13: 0x55772907e0f7 - cmake::fail::hbffdec7994bd7e9a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x55772907da5a - cmake::run::h8cfe1c60355f11d2 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x5577290793ed - cmake::Config::build::h9df7925da24e6bee [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x5577290744b3 - build_script_build::main::hea3e1cf3ace405b9 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 17: 0x5577290767cb - std::rt::lang_start::{{closure}}::h8b392f5483dd0ae7 [INFO] [stderr] at /rustc/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x5577295a0058 - std::rt::lang_start_internal::{{closure}}::h20875b53e93c05e5 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x5577295a0058 - std::panicking::try::do_call::hf41a9e99b462682c [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 20: 0x5577295a0058 - std::panicking::try::h676e31cbf6db58e0 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 21: 0x5577295a0058 - std::panic::catch_unwind::h254ef3e93964825b [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x5577295a0058 - std::rt::lang_start_internal::h8a620deb31f7711f [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x5577290767a7 - std::rt::lang_start::he99c225e71c71475 [INFO] [stderr] at /rustc/783139bd8fc3b94fac9a1bf81bba2c506e8221b6/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x5577290748ca - main [INFO] [stderr] 25: 0x7f743ffba0b3 - __libc_start_main [INFO] [stderr] 26: 0x55772907419e - _start [INFO] [stderr] 27: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "004a19f0b465b0f1c9dfc7cd00aeb3c2818fbf00fa2844cc533a266ee36af8b1"` [INFO] running `"docker" "rm" "-f" "004a19f0b465b0f1c9dfc7cd00aeb3c2818fbf00fa2844cc533a266ee36af8b1"` [INFO] [stdout] 004a19f0b465b0f1c9dfc7cd00aeb3c2818fbf00fa2844cc533a266ee36af8b1