[INFO] crate hdf5 0.6.1 is already in cache [INFO] checking hdf5-0.6.1 against master#7f940ef5d91b53e889f111f27e00849f2f5ae4a2 for pr-72493 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 7f940ef5d91b53e889f111f27e00849f2f5ae4a2 [INFO] running `"/workspace/cargo-home/bin/cargo" "+7f940ef5d91b53e889f111f27e00849f2f5ae4a2" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+7f940ef5d91b53e889f111f27e00849f2f5ae4a2" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+7f940ef5d91b53e889f111f27e00849f2f5ae4a2" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 53c835389b02b09d40302bc2f13fd7f48827f829b0794a51722da872adf6d4a6 [INFO] running `"docker" "start" "-a" "53c835389b02b09d40302bc2f13fd7f48827f829b0794a51722da872adf6d4a6"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking num-complex v0.2.4 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-196b84b811727cf6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a000db4045 - backtrace::backtrace::libunwind::trace::h678b9599e62f63eb [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55a000db4045 - backtrace::backtrace::trace_unsynchronized::hb47d77776d18cf5b [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55a000db4045 - std::sys_common::backtrace::_print_fmt::he1b14c2dc4d370e2 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55a000db4045 - ::fmt::h0e056b70ceff915d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55a000dd7b8c - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x55a000db0ec3 - std::io::Write::write_fmt::h5b95d57b9d83617e [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55a000db6630 - std::sys_common::backtrace::_print::hde4f93cf630dd149 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55a000db6630 - std::sys_common::backtrace::print::hab894e5c65d4445d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55a000db6630 - std::panicking::default_hook::{{closure}}::h069a26eaaf53ac74 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55a000db637c - std::panicking::default_hook::he2b0e031648f6bed [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55a000db6c67 - std::panicking::rust_panic_with_hook::hd8d0481ab65c637b [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x55a000bc75bb - std::panicking::begin_panic::h9d95fd5c87154686 [INFO] [stderr] at /rustc/7f940ef5d91b53e889f111f27e00849f2f5ae4a2/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x55a000b983fb - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4d3b5a5ea210017c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x55a000b9976b - build_script_build::main::hb5fb47728d9d8a7e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x55a000ba365b - std::rt::lang_start::{{closure}}::h2ff247dd4b355012 [INFO] [stderr] at /rustc/7f940ef5d91b53e889f111f27e00849f2f5ae4a2/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55a000db7038 - std::rt::lang_start_internal::{{closure}}::h4838b364df25be59 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55a000db7038 - std::panicking::try::do_call::h0f9bf126f2a30e0a [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x55a000db7038 - std::panicking::try::hf7f4f4a8291fe18c [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x55a000db7038 - std::panic::catch_unwind::hf0742a1b2a42157f [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55a000db7038 - std::rt::lang_start_internal::h8a620deb31f7711f [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55a000ba3637 - std::rt::lang_start::h7bd6b8efc4cc4604 [INFO] [stderr] at /rustc/7f940ef5d91b53e889f111f27e00849f2f5ae4a2/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55a000b9a21a - main [INFO] [stderr] 22: 0x7f14c63010b3 - __libc_start_main [INFO] [stderr] 23: 0x55a000b9419e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "53c835389b02b09d40302bc2f13fd7f48827f829b0794a51722da872adf6d4a6"` [INFO] running `"docker" "rm" "-f" "53c835389b02b09d40302bc2f13fd7f48827f829b0794a51722da872adf6d4a6"` [INFO] [stdout] 53c835389b02b09d40302bc2f13fd7f48827f829b0794a51722da872adf6d4a6