[INFO] updating cached repository https://github.com/Mimerme/Mimerme [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] checking Mimerme/Mimerme against try#8a749131e7beb72f6edacefd2bdcbed3d67b2112 for pr-72331 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-14/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'... [INFO] [stderr] done. [INFO] [stderr] Checking out files: 67% (21/31) Checking out files: 70% (22/31) Checking out files: 74% (23/31) Checking out files: 77% (24/31) Checking out files: 80% (25/31) Checking out files: 83% (26/31) Checking out files: 87% (27/31) Checking out files: 90% (28/31) Checking out files: 93% (29/31) Checking out files: 96% (30/31) Checking out files: 100% (31/31) Checking out files: 100% (31/31), done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 8a749131e7beb72f6edacefd2bdcbed3d67b2112 [INFO] running `"/workspace/cargo-home/bin/cargo" "+8a749131e7beb72f6edacefd2bdcbed3d67b2112" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+8a749131e7beb72f6edacefd2bdcbed3d67b2112" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+8a749131e7beb72f6edacefd2bdcbed3d67b2112" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a950c572dad0704bc3b2cd5e6771ece7fc5881a9ad02884d990c49460c6fa0ae [INFO] running `"docker" "start" "-a" "a950c572dad0704bc3b2cd5e6771ece7fc5881a9ad02884d990c49460c6fa0ae"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling serde v1.0.105 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Checking regex-syntax v0.6.17 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Checking snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] error: failed to run custom build command for `hts-sys v1.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-sys-e0f77d605b04844f/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#ifndef __APPLE__' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#endif' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o header.o header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION_TEXT "1.10.2"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o region.o region.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_libcurl.o hfile_libcurl.c [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hfile_libcurl.c:47:10: fatal error: curl/curl.h: No such file or directory [INFO] [stderr] 47 | #include [INFO] [stderr] | ^~~~~~~~~~~~~ [INFO] [stderr] compilation terminated. [INFO] [stderr] make: *** [Makefile:133: hfile_libcurl.o] Error 1 [INFO] [stderr] thread 'main' panicked at 'failed to build htslib', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a8ace7c814 - backtrace::backtrace::libunwind::trace::h98d3444f0ad70429 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55a8ace7c814 - backtrace::backtrace::trace_unsynchronized::h37f821d20053e6cd [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55a8ace7c814 - std::sys_common::backtrace::_print_fmt::hff04dc7e915a3c85 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55a8ace7c814 - ::fmt::h61891c439a79f00d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55a8acea906c - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x55a8ace785b3 - std::io::Write::write_fmt::h55f7fe3633ce766f [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55a8ace7f9d5 - std::sys_common::backtrace::_print::h78339381acb79e1b [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55a8ace7f9d5 - std::sys_common::backtrace::print::h525aa9f9405c80a1 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55a8ace7f9d5 - std::panicking::default_hook::{{closure}}::hace90b8a218287e6 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55a8ace7f727 - std::panicking::default_hook::h160b6beccc49b335 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55a8ace80018 - std::panicking::rust_panic_with_hook::h36f6804eea3f553a [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x55a8acd01eeb - std::panicking::begin_panic::h4403e90530bb135a [INFO] [stderr] at /rustc/8a749131e7beb72f6edacefd2bdcbed3d67b2112/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x55a8ac89c3ab - build_script_build::main::hab3f39bcfb9e223b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86 [INFO] [stderr] 13: 0x55a8ac89ddfb - std::rt::lang_start::{{closure}}::h75de2ebed516151f [INFO] [stderr] at /rustc/8a749131e7beb72f6edacefd2bdcbed3d67b2112/src/libstd/rt.rs:67 [INFO] [stderr] 14: 0x55a8ace804d9 - std::rt::lang_start_internal::{{closure}}::h7c7701ace7781644 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 15: 0x55a8ace804d9 - std::panicking::try::do_call::h25761ef781a3cec3 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 16: 0x55a8ace804d9 - std::panicking::try::hc2ed2ebc2df17cc1 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 17: 0x55a8ace804d9 - std::panic::catch_unwind::h548ef5f09b7c73ca [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 18: 0x55a8ace804d9 - std::rt::lang_start_internal::h9a98dc8e2c22711e [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 19: 0x55a8ac89ddd7 - std::rt::lang_start::hcb16328e4da0e706 [INFO] [stderr] at /rustc/8a749131e7beb72f6edacefd2bdcbed3d67b2112/src/libstd/rt.rs:67 [INFO] [stderr] 20: 0x55a8ac89d74a - main [INFO] [stderr] 21: 0x7f78c0e880b3 - __libc_start_main [INFO] [stderr] 22: 0x55a8ac89b1be - _start [INFO] [stderr] 23: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "a950c572dad0704bc3b2cd5e6771ece7fc5881a9ad02884d990c49460c6fa0ae"` [INFO] running `"docker" "rm" "-f" "a950c572dad0704bc3b2cd5e6771ece7fc5881a9ad02884d990c49460c6fa0ae"` [INFO] [stdout] a950c572dad0704bc3b2cd5e6771ece7fc5881a9ad02884d990c49460c6fa0ae