[INFO] crate chemfiles-sys 0.9.3 is already in cache [INFO] checking chemfiles-sys-0.9.3 against master#339f574809bf8e4166b8de3cdbe7df181d37af3d for pr-71896 [INFO] extracting crate chemfiles-sys 0.9.3 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate chemfiles-sys 0.9.3 on toolchain 339f574809bf8e4166b8de3cdbe7df181d37af3d [INFO] running `"/workspace/cargo-home/bin/cargo" "+339f574809bf8e4166b8de3cdbe7df181d37af3d" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate chemfiles-sys 0.9.3 [INFO] finished tweaking crates.io crate chemfiles-sys 0.9.3 [INFO] tweaked toml for crates.io crate chemfiles-sys 0.9.3 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+339f574809bf8e4166b8de3cdbe7df181d37af3d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+339f574809bf8e4166b8de3cdbe7df181d37af3d" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+339f574809bf8e4166b8de3cdbe7df181d37af3d" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 02762d2bd1416b709571268a401010fda7ecdf9c203fe780bfa31e602b56708f [INFO] running `"docker" "start" "-a" "02762d2bd1416b709571268a401010fda7ecdf9c203fe780bfa31e602b56708f"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling chemfiles-sys v0.9.3 (/opt/rustwide/workdir) [INFO] [stderr] Checking libc v0.2.69 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.3 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-fe8ebda3295b5c57/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-9e083bb592e55ade/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Running CMake version 3.16.3 [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking xdrfile sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-9e083bb592e55ade/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target xdrfile [INFO] [stderr] Scanning dependencies of target bzip2 [INFO] [stderr] [ 0%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_trr.c.o [INFO] [stderr] Scanning dependencies of target pugixml [INFO] [stderr] [ 1%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile_xtc.c.o [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 2%] Building C object chemfiles/external/xdrfile/CMakeFiles/xdrfile.dir/src/xdrfile.c.o [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] Scanning dependencies of target lzma [INFO] [stderr] [ 3%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 4%] Building C object 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chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/shared_allocator.cpp.o [INFO] [stderr] [ 85%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/topology.cpp.o [INFO] [stderr] [ 86%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/trajectory.cpp.o [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning (dev) in CMakeLists.txt: [INFO] [stderr] No project() command is present. The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:27 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/atom.cpp:10: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/frame.cpp:9: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/cell.cpp:9: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_atoms_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/frame.cpp:49:53: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 49 | *count = static_cast(frame->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/frame.cpp: In function 'chfl_status chfl_frame_properties_count(const CHFL_FRAME*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/frame.cpp:212:66: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 212 | *count = static_cast(frame->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/misc.cpp:8: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:76: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:128: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:180: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/atom.cpp: In function 'chfl_status chfl_atom_properties_count(const CHFL_ATOM*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/atom.cpp:189:65: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 189 | *count = static_cast(atom->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp:10: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/property.cpp:11: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/selection.cpp:11: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp:88:55: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 88 | *count = static_cast(residue->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_atoms(const CHFL_RESIDUE*, uint64_t*, uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp:103:51: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 103 | atoms[i] = static_cast(index); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp: In function 'chfl_status chfl_residue_properties_count(const CHFL_RESIDUE*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/residue.cpp:149:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 149 | *count = static_cast(residue->properties().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:9: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] In file included from /opt/rustwide/workdir/chemfiles/src/capi/trajectory.cpp:9: [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp: In function 'size_t chemfiles::checked_cast(uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:27:47: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 27 | if (value > static_cast(SIZE_MAX)) { [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:30:37: warning: useless cast to type 'size_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 30 | return static_cast(value); [INFO] [stderr] | ^ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:206: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:258: chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:193: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o] Error 1 [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_atoms_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:56:56: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 56 | *count = static_cast(topology->size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_bonds_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:86:64: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 86 | *count = static_cast(topology->bonds().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_angles_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:94:65: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 94 | *count = static_cast(topology->angles().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_dihedrals_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:102:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 102 | *count = static_cast(topology->dihedrals().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_impropers_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:110:68: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 110 | *count = static_cast(topology->impropers().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_bonds(const CHFL_TOPOLOGY*, uint64_t (*)[2], uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:126:59: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 126 | data[i][0] = static_cast(bonds[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:127:59: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 127 | data[i][1] = static_cast(bonds[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_angles(const CHFL_TOPOLOGY*, uint64_t (*)[3], uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:144:60: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 144 | data[i][0] = static_cast(angles[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:145:60: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 145 | data[i][1] = static_cast(angles[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:146:60: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 146 | data[i][2] = static_cast(angles[i][2]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_dihedrals(const CHFL_TOPOLOGY*, uint64_t (*)[4], uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:163:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 163 | data[i][0] = static_cast(dihedrals[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:164:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 164 | data[i][1] = static_cast(dihedrals[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:165:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 165 | data[i][2] = static_cast(dihedrals[i][2]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:166:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 166 | data[i][3] = static_cast(dihedrals[i][3]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_impropers(const CHFL_TOPOLOGY*, uint64_t (*)[4], uint64_t)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:183:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 183 | data[i][0] = static_cast(impropers[i][0]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:184:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 184 | data[i][1] = static_cast(impropers[i][1]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:185:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 185 | data[i][2] = static_cast(impropers[i][2]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:186:63: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 186 | data[i][3] = static_cast(impropers[i][3]); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp: In function 'chfl_status chfl_topology_residues_count(const CHFL_TOPOLOGY*, uint64_t*)': [INFO] [stderr] /opt/rustwide/workdir/chemfiles/src/capi/topology.cpp:209:67: warning: useless cast to type 'uint64_t' {aka 'long unsigned int'} [-Wuseless-cast] [INFO] [stderr] 209 | *count = static_cast(topology->residues().size()); [INFO] [stderr] | ^ [INFO] [stderr] /opt/rustwide/workdir/chemfiles/include/chemfiles/capi/utils.hpp:81:9: note: in definition of macro 'CHFL_ERROR_CATCH' [INFO] [stderr] 81 | instructions \ [INFO] [stderr] | ^~~~~~~~~~~~ [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:332: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55efdece7634 - backtrace::backtrace::libunwind::trace::hfcd33194db0151d4 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55efdece7634 - backtrace::backtrace::trace_unsynchronized::hfd1904bbbd5335b5 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55efdece7634 - std::sys_common::backtrace::_print_fmt::h8476c57b177b254e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55efdece7634 - ::fmt::h73acbc5f6d4b1044 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55efded0c1bc - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x55efdece3de3 - std::io::Write::write_fmt::h5722fa40bb2afafd [INFO] [stderr] at src/libstd/io/mod.rs:1532 [INFO] [stderr] 6: 0x55efdecea275 - std::sys_common::backtrace::_print::ha468e873aada7c78 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55efdecea275 - std::sys_common::backtrace::print::h149365a2f029de62 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55efdecea275 - std::panicking::default_hook::{{closure}}::hb4a33f9e05934a52 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55efdece9fb2 - std::panicking::default_hook::hc4535d7b0c743abd [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55efdecea8b8 - std::panicking::rust_panic_with_hook::haa34a96a6dbd5a2e [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x55efdecea4bb - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:385 [INFO] [stderr] 12: 0x55efdecea42b - std::panicking::begin_panic_fmt::h4623165abc0f2e64 [INFO] [stderr] at src/libstd/panicking.rs:339 [INFO] [stderr] 13: 0x55efdec817b7 - cmake::fail::h7bd293347d1d625b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 14: 0x55efdec810fc - cmake::run::hc348c2cd9328ef61 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 15: 0x55efdec7d856 - cmake::Config::build::h67845c2d25234cf6 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:745 [INFO] [stderr] 16: 0x55efdec78988 - build_script_build::build_chemfiles::h021fdd91897a8491 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:18 [INFO] [stderr] 17: 0x55efdec787ae - build_script_build::main::h5d68c13163bbef2e [INFO] [stderr] at /opt/rustwide/workdir/build.rs:8 [INFO] [stderr] 18: 0x55efdec7993b - std::rt::lang_start::{{closure}}::h564a53494630eee1 [INFO] [stderr] at /rustc/339f574809bf8e4166b8de3cdbe7df181d37af3d/src/libstd/rt.rs:67 [INFO] [stderr] 19: 0x55efdeceac88 - std::rt::lang_start_internal::{{closure}}::h8ee41efd8ae7ff76 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 20: 0x55efdeceac88 - std::panicking::try::do_call::h0a4c4514ee6ebbfc [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 21: 0x55efdeceac88 - std::panicking::try::h7c2f3858e42d7516 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 22: 0x55efdeceac88 - std::panic::catch_unwind::h76c4030fa5655c1e [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 23: 0x55efdeceac88 - std::rt::lang_start_internal::h1c1398259f72ace6 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 24: 0x55efdec79917 - std::rt::lang_start::h3f4f2248c87f8f2c [INFO] [stderr] at /rustc/339f574809bf8e4166b8de3cdbe7df181d37af3d/src/libstd/rt.rs:67 [INFO] [stderr] 25: 0x55efdec7928a - main [INFO] [stderr] 26: 0x7fe4e39a30b3 - __libc_start_main [INFO] [stderr] 27: 0x55efdec7819e - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "02762d2bd1416b709571268a401010fda7ecdf9c203fe780bfa31e602b56708f"` [INFO] running `"docker" "rm" "-f" "02762d2bd1416b709571268a401010fda7ecdf9c203fe780bfa31e602b56708f"` [INFO] [stdout] 02762d2bd1416b709571268a401010fda7ecdf9c203fe780bfa31e602b56708f