[INFO] crate hdf5-rs 0.2.0 is already in cache [INFO] checking hdf5-rs-0.2.0 against try#d93021f5faa26e4f9d2719e79f9974e06aa40e17 for pr-71873 [INFO] extracting crate hdf5-rs 0.2.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate hdf5-rs 0.2.0 on toolchain d93021f5faa26e4f9d2719e79f9974e06aa40e17 [INFO] running `"/workspace/cargo-home/bin/cargo" "+d93021f5faa26e4f9d2719e79f9974e06aa40e17" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-sys from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency remutex from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0 [INFO] finished tweaking crates.io crate hdf5-rs 0.2.0 [INFO] tweaked toml for crates.io crate hdf5-rs 0.2.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+d93021f5faa26e4f9d2719e79f9974e06aa40e17" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+d93021f5faa26e4f9d2719e79f9974e06aa40e17" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+d93021f5faa26e4f9d2719e79f9974e06aa40e17" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e3b0c793d964c287de4974f34c2a4176acc370f771d136371bed370f87aa5ec2 [INFO] running `"docker" "start" "-a" "e3b0c793d964c287de4974f34c2a4176acc370f771d136371bed370f87aa5ec2"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.70 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Compiling libhdf5-lib v0.2.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking remutex v0.1.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Compiling libhdf5-sys v0.2.0 [INFO] [stderr] Compiling hdf5-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520.build_script_build.e7r5c0qi-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520.build_script_build.e7r5c0qi-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520.build_script_build.e7r5c0qi-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520.build_script_build.e7r5c0qi-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520.build_script_build.e7r5c0qi-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520" "/opt/rustwide/target/debug/build/libhdf5-sys-dd7a4dac4a8e5520/build_script_build-dd7a4dac4a8e5520.1sz8fyaz8bwofyf2.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-807843c3da726399.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-7d65a344221c409b.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-54df1a0c3024f5bd.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-bb312de2a5d7d307.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-60c21d234379de22.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-045480d965da2c45.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-8ec1303a38498da9.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-18658537df359212.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-b87be9f0e57bd4bf.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-3a677d13d4ec517d.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-ac41f78688451395.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-f11f1597d535049a.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-428d15b56101bdc7.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-941f7f6bc622e313.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-e77b8f5da9460407.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stderr] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: could not compile `libhdf5-sys`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: linking with `cc` failed: exit code: 1 [INFO] [stderr] | [INFO] [stderr] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d.build_script_build.4ixvbaz5-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d.build_script_build.4ixvbaz5-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d.build_script_build.4ixvbaz5-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d.build_script_build.4ixvbaz5-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d.build_script_build.4ixvbaz5-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d" "/opt/rustwide/target/debug/build/hdf5-rs-b44f64774956002d/build_script_build-b44f64774956002d.3goe55hxc3stfx6.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-807843c3da726399.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-7d65a344221c409b.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-54df1a0c3024f5bd.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-bb312de2a5d7d307.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-60c21d234379de22.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-045480d965da2c45.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-8ec1303a38498da9.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-18658537df359212.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-b87be9f0e57bd4bf.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-3a677d13d4ec517d.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-ac41f78688451395.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-f11f1597d535049a.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-428d15b56101bdc7.rlib" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-941f7f6bc622e313.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/d93021f5faa26e4f9d2719e79f9974e06aa40e17/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-e77b8f5da9460407.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stderr] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stderr] collect2: error: ld returned 1 exit status [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: could not compile `hdf5-rs`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "e3b0c793d964c287de4974f34c2a4176acc370f771d136371bed370f87aa5ec2"` [INFO] running `"docker" "rm" "-f" "e3b0c793d964c287de4974f34c2a4176acc370f771d136371bed370f87aa5ec2"` [INFO] [stdout] e3b0c793d964c287de4974f34c2a4176acc370f771d136371bed370f87aa5ec2