[INFO] crate hdf5 0.6.1 is already in cache [INFO] checking hdf5-0.6.1 against master#7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3 for pr-71873 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3 [INFO] running `"/workspace/cargo-home/bin/cargo" "+7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 88c2dc8dbc4e1d182efa9232445054f1a4b85fe36f9b9016e5302ed37e1f0473 [INFO] running `"docker" "start" "-a" "88c2dc8dbc4e1d182efa9232445054f1a4b85fe36f9b9016e5302ed37e1f0473"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-196b84b811727cf6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ab42eebe34 - backtrace::backtrace::libunwind::trace::hfcd33194db0151d4 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55ab42eebe34 - backtrace::backtrace::trace_unsynchronized::hfd1904bbbd5335b5 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55ab42eebe34 - std::sys_common::backtrace::_print_fmt::h8476c57b177b254e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55ab42eebe34 - ::fmt::h73acbc5f6d4b1044 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55ab42f1020c - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x55ab42ee8d13 - std::io::Write::write_fmt::h5722fa40bb2afafd [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55ab42eee4b5 - std::sys_common::backtrace::_print::ha468e873aada7c78 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55ab42eee4b5 - std::sys_common::backtrace::print::h149365a2f029de62 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55ab42eee4b5 - std::panicking::default_hook::{{closure}}::hb4a33f9e05934a52 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55ab42eee1f2 - std::panicking::default_hook::hc4535d7b0c743abd [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55ab42eeeaf8 - std::panicking::rust_panic_with_hook::haa34a96a6dbd5a2e [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x55ab42cdc799 - std::panicking::begin_panic::hab6abe32f009feec [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/panicking.rs:404 [INFO] [stderr] 12: 0x55ab42ca359c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4d3b5a5ea210017c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x55ab42ca497c - build_script_build::main::hb5fb47728d9d8a7e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x55ab42cb15ab - std::rt::lang_start::{{closure}}::hf8e6fb0923b16924 [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55ab42eeeec8 - std::rt::lang_start_internal::{{closure}}::h8ee41efd8ae7ff76 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55ab42eeeec8 - std::panicking::try::do_call::h0a4c4514ee6ebbfc [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x55ab42eeeec8 - std::panicking::try::h7c2f3858e42d7516 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x55ab42eeeec8 - std::panic::catch_unwind::h76c4030fa5655c1e [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55ab42eeeec8 - std::rt::lang_start_internal::h1c1398259f72ace6 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55ab42cb1587 - std::rt::lang_start::h8634f86e27a86b2a [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55ab42ca542a - main [INFO] [stderr] 22: 0x7f9d0f10f0b3 - __libc_start_main [INFO] [stderr] 23: 0x55ab42c9f19e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "88c2dc8dbc4e1d182efa9232445054f1a4b85fe36f9b9016e5302ed37e1f0473"` [INFO] running `"docker" "rm" "-f" "88c2dc8dbc4e1d182efa9232445054f1a4b85fe36f9b9016e5302ed37e1f0473"` [INFO] [stdout] 88c2dc8dbc4e1d182efa9232445054f1a4b85fe36f9b9016e5302ed37e1f0473