[INFO] cloning repository https://github.com/taktoa/chemsim [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/taktoa/chemsim" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftaktoa%2Fchemsim"` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftaktoa%2Fchemsim'... [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 52b3a596378cb88475be071fcf18019bb36ffb09 [INFO] checking taktoa/chemsim against master#7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3 for pr-71873 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftaktoa%2Fchemsim" "/workspace/builds/worker-4/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/taktoa/chemsim on toolchain 7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3 [INFO] running `"/workspace/cargo-home/bin/cargo" "+7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/taktoa/chemsim [INFO] finished tweaking git repo https://github.com/taktoa/chemsim [INFO] tweaked toml for git repo https://github.com/taktoa/chemsim written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/taktoa/chemsim already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6a28c7dea9a4b5ebe6fe535e5a1b01d84a21bb64ad81d7a78ce9e30f580488c3 [INFO] running `"docker" "start" "-a" "6a28c7dea9a4b5ebe6fe535e5a1b01d84a21bb64ad81d7a78ce9e30f580488c3"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking scopeguard v0.3.3 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Checking rand_core v0.4.0 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Checking linked-hash-map v0.5.2 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking rustc-serialize v0.3.24 [INFO] [stderr] Checking smallvec v0.6.9 [INFO] [stderr] Checking stable_deref_trait v1.1.1 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Compiling regex v1.1.6 [INFO] [stderr] Compiling same-file v0.1.3 [INFO] [stderr] Compiling remove_dir_all v0.5.1 [INFO] [stderr] Checking utf8-ranges v1.0.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Checking quick-error v1.2.2 [INFO] [stderr] Compiling typenum v1.10.0 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Compiling sdl2 v0.32.2 [INFO] [stderr] Compiling ndarray v0.10.14 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling dimensioned v0.7.0 [INFO] [stderr] Checking termcolor v1.0.4 [INFO] [stderr] Checking encode_unicode v0.3.5 [INFO] [stderr] Checking half v1.3.0 [INFO] [stderr] Checking current v0.1.2 [INFO] [stderr] Checking range v0.3.1 [INFO] [stderr] Checking assert v0.7.4 [INFO] [stderr] Checking piston-history_tree v0.1.0 [INFO] [stderr] Checking random v0.12.2 [INFO] [stderr] Checking ttf-noto-sans v0.1.1 [INFO] [stderr] Checking log v0.4.6 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling sdl2-sys v0.32.6 [INFO] [stderr] Checking draw_state v0.8.0 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Compiling webm-sys v1.0.0 [INFO] [stderr] Checking xml-rs v0.7.0 [INFO] [stderr] Compiling x11-dl v2.18.3 [INFO] [stderr] Checking regex-syntax v0.6.6 [INFO] [stderr] Checking owning_ref v0.4.0 [INFO] [stderr] Compiling walkdir v1.0.7 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.3 [INFO] [stderr] Checking humantime v1.2.0 [INFO] [stderr] Checking piston-shaders v0.3.1 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Compiling proc-macro2 v0.4.27 [INFO] [stderr] Compiling chemfiles-sys v0.8.0 [INFO] [stderr] Compiling nanomsg-sys v0.7.2 [INFO] [stderr] Compiling libvpx-native-sys v4.0.7 [INFO] [stderr] Checking quaternion v0.3.1 [INFO] [stderr] Checking piston3d-construct v0.1.0 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Checking log v0.3.9 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Compiling syn v0.11.11 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking nix v0.13.0 [INFO] [stderr] Checking time v0.1.42 [INFO] [stderr] Checking wait-timeout v0.2.0 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Checking crossbeam-epoch v0.7.1 [INFO] [stderr] Checking crossbeam-epoch v0.3.1 [INFO] [stderr] Checking rand_pcg v0.1.2 [INFO] [stderr] Checking rand_chacha v0.1.1 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking line_drawing v0.7.0 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Compiling gl_generator v0.10.0 [INFO] [stderr] Checking piston3d-cam v0.3.0 [INFO] [stderr] Compiling gl_generator v0.9.0 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking xmltree v0.8.0 [INFO] [stderr] Checking uuid v0.6.5 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking term v0.5.2 [INFO] [stderr] error: failed to run custom build command for `libvpx-native-sys v4.0.7` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/libvpx-native-sys-8b5f537558d1d68d/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'called `Result::unwrap()` on an `Err` value: Failure { command: "\"pkg-config\" \"--libs\" \"--cflags\" \"vpx\"", output: Output { status: ExitStatus(ExitStatus(256)), stdout: "", stderr: "Package vpx was not found in the pkg-config search path.\nPerhaps you should add the directory containing `vpx.pc\'\nto the PKG_CONFIG_PATH environment variable\nNo package \'vpx\' found\n" } }', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/libvpx-native-sys-4.0.7/build.rs:21:18 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5642e570b324 - backtrace::backtrace::libunwind::trace::hfcd33194db0151d4 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x5642e570b324 - backtrace::backtrace::trace_unsynchronized::hfd1904bbbd5335b5 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5642e570b324 - std::sys_common::backtrace::_print_fmt::h8476c57b177b254e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x5642e570b324 - ::fmt::h73acbc5f6d4b1044 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x5642e572fa7c - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x5642e5708253 - std::io::Write::write_fmt::h5722fa40bb2afafd [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x5642e570d975 - std::sys_common::backtrace::_print::ha468e873aada7c78 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x5642e570d975 - std::sys_common::backtrace::print::h149365a2f029de62 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x5642e570d975 - std::panicking::default_hook::{{closure}}::hb4a33f9e05934a52 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x5642e570d6b2 - std::panicking::default_hook::hc4535d7b0c743abd [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x5642e570df68 - std::panicking::rust_panic_with_hook::haa34a96a6dbd5a2e [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x5642e570db6b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:385 [INFO] [stderr] 12: 0x5642e572ee61 - core::panicking::panic_fmt::hd101a87121fa411f [INFO] [stderr] at src/libcore/panicking.rs:89 [INFO] [stderr] 13: 0x5642e572ec83 - core::option::expect_none_failed::h4f0e89faa3179bf7 [INFO] [stderr] at src/libcore/option.rs:1272 [INFO] [stderr] 14: 0x5642e56c3af0 - core::result::Result::unwrap::hf8ecf54d7394d419 [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libcore/result.rs:1005 [INFO] [stderr] 15: 0x5642e56be51d - build_script_build::main::hdc6374128df9eb1d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/libvpx-native-sys-4.0.7/build.rs:21 [INFO] [stderr] 16: 0x5642e56c206b - std::rt::lang_start::{{closure}}::h2e362453e1ce98a6 [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/rt.rs:67 [INFO] [stderr] 17: 0x5642e570e338 - std::rt::lang_start_internal::{{closure}}::h8ee41efd8ae7ff76 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 18: 0x5642e570e338 - std::panicking::try::do_call::h0a4c4514ee6ebbfc [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 19: 0x5642e570e338 - std::panicking::try::h7c2f3858e42d7516 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 20: 0x5642e570e338 - std::panic::catch_unwind::h76c4030fa5655c1e [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 21: 0x5642e570e338 - std::rt::lang_start_internal::h1c1398259f72ace6 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 22: 0x5642e56c2047 - std::rt::lang_start::h4b173c6ce0cde179 [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/rt.rs:67 [INFO] [stderr] 23: 0x5642e56c067a - main [INFO] [stderr] 24: 0x7fbde3de30b3 - __libc_start_main [INFO] [stderr] 25: 0x5642e56be19e - _start [INFO] [stderr] 26: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.8.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-e1eeb68d882cb752/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-50b335e56b57d62b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-50b335e56b57d62b/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target tng_io_zlib [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target fmt-object [INFO] [stderr] Scanning dependencies of target chemfiles_objects [INFO] [stderr] [ 1%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/compress.c.o [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 1%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/deflate.c.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/inffast.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/lammpsplugin.c.o [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 3%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/inflate.c.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/external/fmt/fmt/CMakeFiles/fmt-object.dir/posix.cc.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/adler32.c.o [INFO] [stderr] [ 6%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/mol2plugin.cxx.o [INFO] [stderr] [ 7%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/crc32.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 9%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 10%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] [ 12%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/inftrees.c.o [INFO] [stderr] [ 14%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/attr.c.o [INFO] [stderr] [ 15%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/trees.c.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/uncompr.c.o [INFO] [stderr] [ 17%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o [INFO] [stderr] [ 18%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/coder.c.o [INFO] [stderr] [ 20%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/zutil.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/dict.c.o [INFO] [stderr] [ 22%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/fixpoint.c.o [INFO] [stderr] [ 23%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/dim.c.o [INFO] [stderr] [ 24%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o [INFO] [stderr] [ 25%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/lookup3.c.o [INFO] [stderr] [ 25%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc_hashmap.c.o [INFO] [stderr] [ 26%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffman.c.o [INFO] [stderr] [ 27%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/lz77.c.o [INFO] [stderr] [ 28%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc3dispatch.c.o [INFO] [stderr] [ 29%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffmem.c.o [INFO] [stderr] [ 29%] Built target tng_io_zlib [INFO] [stderr] [ 30%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc3internal.c.o [INFO] [stderr] [ 31%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/ncio.c.o [INFO] [stderr] [ 32%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/merge_sort.c.o [INFO] [stderr] [ 33%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/ncx.c.o [INFO] [stderr] [ 33%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/v1hpg.c.o [INFO] [stderr] [ 34%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/putget.c.o [INFO] [stderr] [ 35%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/mtf.c.o [INFO] [stderr] [ 35%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/rle.c.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/tng_compress.c.o [INFO] [stderr] [ 37%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/var.c.o [INFO] [stderr] [ 38%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/warnmalloc.c.o [INFO] [stderr] [ 40%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/vals16.c.o [INFO] [stderr] [ 41%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/datt.c.o [INFO] [stderr] [ 41%] Built target molfiles [INFO] [stderr] [ 42%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o [INFO] [stderr] [ 43%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dattinq.c.o [INFO] [stderr] [ 44%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dattget.c.o [INFO] [stderr] [ 45%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dattput.c.o [INFO] [stderr] [ 46%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ddim.c.o [INFO] [stderr] [ 46%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dcopy.c.o [INFO] [stderr] [ 47%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o [INFO] [stderr] [ 48%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ddispatch.c.o [INFO] [stderr] [ 50%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/derror.c.o [INFO] [stderr] [ 50%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o [INFO] [stderr] [ 51%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dfile.c.o [INFO] [stderr] [ 52%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dinternal.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dstring.c.o [INFO] [stderr] [ 54%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dparallel.c.o [INFO] [stderr] [ 55%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dutf8proc.c.o [INFO] [stderr] [ 56%] Building CXX object chemfiles/external/fmt/fmt/CMakeFiles/fmt-object.dir/format.cc.o [INFO] [stderr] [ 57%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/md5.c.o [INFO] [stderr] [ 58%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvarget.c.o [INFO] [stderr] [ 60%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvar.c.o [INFO] [stderr] [ 61%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvarinq.c.o [INFO] [stderr] [ 62%] Building CXX object chemfiles/external/fmt/fmt/CMakeFiles/fmt-object.dir/ostream.cc.o [INFO] [stderr] [ 63%] Building CXX object chemfiles/external/fmt/fmt/CMakeFiles/fmt-object.dir/printf.cc.o [INFO] [stderr] [ 64%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvarput.c.o [INFO] [stderr] [ 64%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nc.c.o [INFO] [stderr] [ 65%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o [INFO] [stderr] [ 66%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ncbytes.c.o [INFO] [stderr] [ 67%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nchashmap.c.o [INFO] [stderr] [ 68%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nclist.c.o [INFO] [stderr] [ 69%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nclog.c.o [INFO] [stderr] [ 70%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nclistmgr.c.o [INFO] [stderr] [ 70%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nctime.c.o [INFO] [stderr] [ 70%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o [INFO] [stderr] [ 71%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ncuri.c.o [INFO] [stderr] [ 72%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/posixio.c.o [INFO] [stderr] [ 73%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o [INFO] [stderr] [ 74%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o [INFO] [stderr] [ 75%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o [INFO] [stderr] [ 76%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selections.cpp.o [INFO] [stderr] [ 77%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o [INFO] [stderr] [ 77%] Built target netcdf [INFO] [stderr] [ 77%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o [INFO] [stderr] [ 78%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o [INFO] [stderr] [ 80%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/atom.cpp.o [INFO] [stderr] [ 81%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/cell.cpp.o [INFO] [stderr] [ 81%] Built target tng_io [INFO] [stderr] [ 82%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o [INFO] [stderr] [ 83%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o [INFO] [stderr] [ 83%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/property.cpp.o [INFO] [stderr] [ 83%] Built target fmt-object [INFO] [stderr] [ 84%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/residue.cpp.o [INFO] [stderr] [ 85%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/selection.cpp.o [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning (dev) in CMakeLists.txt: [INFO] [stderr] No project() command is present. The top-level CMakeLists.txt file must [INFO] [stderr] contain a literal, direct call to the project() command. Add a line of [INFO] [stderr] code such as [INFO] [stderr] [INFO] [stderr] project(ProjectName) [INFO] [stderr] [INFO] [stderr] near the top of the file, but after cmake_minimum_required(). [INFO] [stderr] [INFO] [stderr] CMake is pretending there is a "project(Project)" command on the first [INFO] [stderr] line. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:18 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-50b335e56b57d62b/out/build/chemfiles/external/fmt/CMakeLists.txt:8 (cmake_policy): [INFO] [stderr] The OLD behavior for policy CMP0048 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-50b335e56b57d62b/out/build/chemfiles/external/fmt/CMakeLists.txt:12 (cmake_policy): [INFO] [stderr] The OLD behavior for policy CMP0063 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:76: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:128: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] make[1]: *** [CMakeFiles/Makefile2:273: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [Makefile:130: all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.38/src/lib.rs:813:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x556884ad2624 - backtrace::backtrace::libunwind::trace::hfcd33194db0151d4 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x556884ad2624 - backtrace::backtrace::trace_unsynchronized::hfd1904bbbd5335b5 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x556884ad2624 - std::sys_common::backtrace::_print_fmt::h8476c57b177b254e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x556884ad2624 - ::fmt::h73acbc5f6d4b1044 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x556884af714c - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x556884aced93 - std::io::Write::write_fmt::h5722fa40bb2afafd [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x556884ad5215 - std::sys_common::backtrace::_print::ha468e873aada7c78 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x556884ad5215 - std::sys_common::backtrace::print::h149365a2f029de62 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x556884ad5215 - std::panicking::default_hook::{{closure}}::hb4a33f9e05934a52 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x556884ad4f52 - std::panicking::default_hook::hc4535d7b0c743abd [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x556884ad5858 - std::panicking::rust_panic_with_hook::haa34a96a6dbd5a2e [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x556884ad545b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:385 [INFO] [stderr] 12: 0x556884ad53cb - std::panicking::begin_panic_fmt::h4623165abc0f2e64 [INFO] [stderr] at src/libstd/panicking.rs:339 [INFO] [stderr] 13: 0x556884a6f267 - cmake::fail::ha97808fff306bddc [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.38/src/lib.rs:813 [INFO] [stderr] 14: 0x556884a6ebac - cmake::run::hae16311162e740c3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.38/src/lib.rs:791 [INFO] [stderr] 15: 0x556884a6b32d - cmake::Config::build::hf69d818ed864f55f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.38/src/lib.rs:700 [INFO] [stderr] 16: 0x556884a673f8 - build_script_build::build_chemfiles::h7cf96efaf8a15ac6 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/build.rs:18 [INFO] [stderr] 17: 0x556884a6721e - build_script_build::main::h48a3976e1f31d1d1 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/build.rs:8 [INFO] [stderr] 18: 0x556884a67d6b - std::rt::lang_start::{{closure}}::h290a6f4ecca52a24 [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/rt.rs:67 [INFO] [stderr] 19: 0x556884ad5c28 - std::rt::lang_start_internal::{{closure}}::h8ee41efd8ae7ff76 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 20: 0x556884ad5c28 - std::panicking::try::do_call::h0a4c4514ee6ebbfc [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 21: 0x556884ad5c28 - std::panicking::try::h7c2f3858e42d7516 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 22: 0x556884ad5c28 - std::panic::catch_unwind::h76c4030fa5655c1e [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 23: 0x556884ad5c28 - std::rt::lang_start_internal::h1c1398259f72ace6 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 24: 0x556884a67d47 - std::rt::lang_start::h984c369580091244 [INFO] [stderr] at /rustc/7c59a81a5fcbaaca311f744cd7c68d99bfbb05d3/src/libstd/rt.rs:67 [INFO] [stderr] 25: 0x556884a67cfa - main [INFO] [stderr] 26: 0x7f0d3cebe0b3 - __libc_start_main [INFO] [stderr] 27: 0x556884a6619e - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "6a28c7dea9a4b5ebe6fe535e5a1b01d84a21bb64ad81d7a78ce9e30f580488c3"` [INFO] running `"docker" "rm" "-f" "6a28c7dea9a4b5ebe6fe535e5a1b01d84a21bb64ad81d7a78ce9e30f580488c3"` [INFO] [stdout] 6a28c7dea9a4b5ebe6fe535e5a1b01d84a21bb64ad81d7a78ce9e30f580488c3