[INFO] updating cached repository https://github.com/sveint/bamstats
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 7e79d502a15c6fabeeeb0ef2974803da91562565
[INFO] checking sveint/bamstats against try#d7b51666469c792a8a3f40849607739bae1e705e for pr-71665
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats" "/workspace/builds/worker-3/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/sveint/bamstats on toolchain d7b51666469c792a8a3f40849607739bae1e705e
[INFO] running `"/workspace/cargo-home/bin/cargo" "+d7b51666469c792a8a3f40849607739bae1e705e" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/sveint/bamstats
[INFO] finished tweaking git repo https://github.com/sveint/bamstats
[INFO] tweaked toml for git repo https://github.com/sveint/bamstats written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/sveint/bamstats already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+d7b51666469c792a8a3f40849607739bae1e705e" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr] error: the lock file /workspace/builds/worker-3/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `"/workspace/cargo-home/bin/cargo" "+d7b51666469c792a8a3f40849607739bae1e705e" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/workspace/cargo-home/bin/cargo" "+d7b51666469c792a8a3f40849607739bae1e705e" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+d7b51666469c792a8a3f40849607739bae1e705e" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 9aefb1cfdd6aa47b7359475ad651b69c0b1433b99f478cbf27b5bb4c55a2a447
[INFO] running `"docker" "start" "-a" "9aefb1cfdd6aa47b7359475ad651b69c0b1433b99f478cbf27b5bb4c55a2a447"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling proc-macro2 v1.0.12
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.20
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde v1.0.110
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking gimli v0.21.0
[INFO] [stderr]    Compiling ryu v1.0.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rustc-demangle v0.1.16
[INFO] [stderr]     Checking object v0.19.0
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling rust-htslib v0.5.2
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking itoa v0.4.5
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking strum v0.16.0
[INFO] [stderr]    Compiling libc v0.2.70
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking rand_isaac v0.1.1
[INFO] [stderr]     Checking rand_xorshift v0.1.1
[INFO] [stderr]     Checking rand_hc v0.1.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.7.10
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]    Compiling quote v1.0.4
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking addr2line v0.12.0
[INFO] [stderr]     Checking regex v1.3.7
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking backtrace v0.3.47
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.110
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking bamstats v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused import: `std::io`
[INFO] [stderr]  --> src/main.rs:8:5
[INFO] [stderr]   |
[INFO] [stderr] 8 | use std::io;
[INFO] [stderr]   |     ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `bio::io::fasta`
[INFO] [stderr]   --> src/main.rs:11:5
[INFO] [stderr]    |
[INFO] [stderr] 11 | use bio::io::fasta;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `base`
[INFO] [stderr]   --> src/main.rs:80:14
[INFO] [stderr]    |
[INFO] [stderr] 80 |         for (base, &number) in alignment_counter.iter() {
[INFO] [stderr]    |              ^^^^ help: if this is intentional, prefix it with an underscore: `_base`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: constant is never used: `FASTA_SEQS`
[INFO] [stderr]   --> src/main.rs:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | / const FASTA_SEQS: &'static [ &'static str ] =  &[
[INFO] [stderr] 14 | |     "1 dna:chromosome chromosome:GRCh37:1:1:249250621:1",
[INFO] [stderr] 15 | |     "2 dna:chromosome chromosome:GRCh37:2:1:243199373:1",
[INFO] [stderr] 16 | |     "3 dna:chromosome chromosome:GRCh37:3:1:198022430:1",
[INFO] [stderr] ...  |
[INFO] [stderr] 37 | |     "Y dna:chromosome chromosome:GRCh37:Y:2649521:59034049:1"
[INFO] [stderr] 38 | | ];
[INFO] [stderr]    | |__^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 4 warnings emitted
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::io`
[INFO] [stderr]  --> src/main.rs:8:5
[INFO] [stderr]   |
[INFO] [stderr] 8 | use std::io;
[INFO] [stderr]   |     ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `bio::io::fasta`
[INFO] [stderr]   --> src/main.rs:11:5
[INFO] [stderr]    |
[INFO] [stderr] 11 | use bio::io::fasta;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `base`
[INFO] [stderr]   --> src/main.rs:80:14
[INFO] [stderr]    |
[INFO] [stderr] 80 |         for (base, &number) in alignment_counter.iter() {
[INFO] [stderr]    |              ^^^^ help: if this is intentional, prefix it with an underscore: `_base`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: constant is never used: `FASTA_SEQS`
[INFO] [stderr]   --> src/main.rs:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | / const FASTA_SEQS: &'static [ &'static str ] =  &[
[INFO] [stderr] 14 | |     "1 dna:chromosome chromosome:GRCh37:1:1:249250621:1",
[INFO] [stderr] 15 | |     "2 dna:chromosome chromosome:GRCh37:2:1:243199373:1",
[INFO] [stderr] 16 | |     "3 dna:chromosome chromosome:GRCh37:3:1:198022430:1",
[INFO] [stderr] ...  |
[INFO] [stderr] 37 | |     "Y dna:chromosome chromosome:GRCh37:Y:2649521:59034049:1"
[INFO] [stderr] 38 | | ];
[INFO] [stderr]    | |__^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 4 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 36s
[INFO] running `"docker" "inspect" "9aefb1cfdd6aa47b7359475ad651b69c0b1433b99f478cbf27b5bb4c55a2a447"`
[INFO] running `"docker" "rm" "-f" "9aefb1cfdd6aa47b7359475ad651b69c0b1433b99f478cbf27b5bb4c55a2a447"`
[INFO] [stdout] 9aefb1cfdd6aa47b7359475ad651b69c0b1433b99f478cbf27b5bb4c55a2a447