[INFO] crate yacrd 0.5.1 is already in cache [INFO] checking yacrd-0.5.1 against master#bd0bacc694d7d8175804bb6f690cb846bfa4a9ee for pr-71665 [INFO] extracting crate yacrd 0.5.1 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate yacrd 0.5.1 on toolchain bd0bacc694d7d8175804bb6f690cb846bfa4a9ee [INFO] running `"/workspace/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate yacrd 0.5.1 [INFO] finished tweaking crates.io crate yacrd 0.5.1 [INFO] tweaked toml for crates.io crate yacrd 0.5.1 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f3eb9894585f0af77d2b43ef9bd81f10c7276ff6dfa39555fdb64dade29a30c3 [INFO] running `"docker" "start" "-a" "f3eb9894585f0af77d2b43ef9bd81f10c7276ff6dfa39555fdb64dade29a30c3"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling proc-macro2 v1.0.12 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.19 [INFO] [stderr] Compiling serde v1.0.110 [INFO] [stderr] Compiling libc v0.2.69 [INFO] [stderr] Compiling cc v1.0.52 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling ryu v1.0.4 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Checking itoa v0.4.5 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking approx v0.1.1 [INFO] [stderr] Checking unreachable v1.0.0 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Checking aho-corasick v0.6.10 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v1.0.4 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Checking regex v0.2.11 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking flate2 v1.0.14 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking num-complex v0.1.43 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v0.5.2 [INFO] [stderr] Checking enum_primitive v0.1.1 [INFO] [stderr] Compiling serde_derive v1.0.110 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking serde_json v1.0.53 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking bio v0.21.0 [INFO] [stderr] Checking yacrd v0.5.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:45:44 [INFO] [stderr] | [INFO] [stderr] 45 | pub fn get_input(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:54:52 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn get_readable_file(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:78:46 [INFO] [stderr] | [INFO] [stderr] 78 | pub fn get_readable(input_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:87:39 [INFO] [stderr] | [INFO] [stderr] 87 | fn get_compression(mut in_stream: Box) -> CompressionFormat { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:114:72 [INFO] [stderr] | [INFO] [stderr] 114 | pub fn get_output(output_name: &str, format: CompressionFormat) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:148:43 [INFO] [stderr] | [INFO] [stderr] 148 | fn get_writable(output_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:242:33 [INFO] [stderr] | [INFO] [stderr] 242 | let mut inputs: Vec> = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:255:29 [INFO] [stderr] | [INFO] [stderr] 255 | let mut output: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:336:29 [INFO] [stderr] | [INFO] [stderr] 336 | let mut report: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:45:44 [INFO] [stderr] | [INFO] [stderr] 45 | pub fn get_input(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:54:52 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn get_readable_file(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:78:46 [INFO] [stderr] | [INFO] [stderr] 78 | pub fn get_readable(input_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:87:39 [INFO] [stderr] | [INFO] [stderr] 87 | fn get_compression(mut in_stream: Box) -> CompressionFormat { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:114:72 [INFO] [stderr] | [INFO] [stderr] 114 | pub fn get_output(output_name: &str, format: CompressionFormat) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:148:43 [INFO] [stderr] | [INFO] [stderr] 148 | fn get_writable(output_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:242:33 [INFO] [stderr] | [INFO] [stderr] 242 | let mut inputs: Vec> = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:255:29 [INFO] [stderr] | [INFO] [stderr] 255 | let mut output: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:336:29 [INFO] [stderr] | [INFO] [stderr] 336 | let mut report: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:322:13 [INFO] [stderr] | [INFO] [stderr] 322 | let mut format = [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:325:13 [INFO] [stderr] | [INFO] [stderr] 325 | let mut raw_path = scrubbing_matches.value_of("sequence").unwrap(); [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:326:13 [INFO] [stderr] | [INFO] [stderr] 326 | let mut scrubbed_path = scrubbing_matches.value_of("scrubbed").unwrap(); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:322:13 [INFO] [stderr] | [INFO] [stderr] 322 | let mut format = [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:325:13 [INFO] [stderr] | [INFO] [stderr] 325 | let mut raw_path = scrubbing_matches.value_of("sequence").unwrap(); [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:326:13 [INFO] [stderr] | [INFO] [stderr] 326 | let mut scrubbed_path = scrubbing_matches.value_of("scrubbed").unwrap(); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `Check` [INFO] [stderr] --> src/chimera.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | Check, [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_formats` [INFO] [stderr] --> src/utils.rs:56:8 [INFO] [stderr] | [INFO] [stderr] 56 | pub fn get_sequence_formats(matches: &clap::ArgMatches, formats: &mut Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_format` [INFO] [stderr] --> src/utils.rs:83:8 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn get_sequence_format(filename: &str) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 15 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `Check` [INFO] [stderr] --> src/chimera.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | Check, [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_formats` [INFO] [stderr] --> src/utils.rs:56:8 [INFO] [stderr] | [INFO] [stderr] 56 | pub fn get_sequence_formats(matches: &clap::ArgMatches, formats: &mut Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_format` [INFO] [stderr] --> src/utils.rs:83:8 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn get_sequence_format(filename: &str) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 15 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 07s [INFO] running `"docker" "inspect" "f3eb9894585f0af77d2b43ef9bd81f10c7276ff6dfa39555fdb64dade29a30c3"` [INFO] running `"docker" "rm" "-f" "f3eb9894585f0af77d2b43ef9bd81f10c7276ff6dfa39555fdb64dade29a30c3"` [INFO] [stdout] f3eb9894585f0af77d2b43ef9bd81f10c7276ff6dfa39555fdb64dade29a30c3