[INFO] fetching crate ncbitaxonomy 0.3.0...
[INFO] checking ncbitaxonomy-0.3.0 against master#bd0bacc694d7d8175804bb6f690cb846bfa4a9ee for pr-71665
[INFO] extracting crate ncbitaxonomy 0.3.0 into /workspace/builds/worker-12/source
[INFO] validating manifest of crates.io crate ncbitaxonomy 0.3.0 on toolchain bd0bacc694d7d8175804bb6f690cb846bfa4a9ee
[INFO] running `"/workspace/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate ncbitaxonomy 0.3.0
[INFO] finished tweaking crates.io crate ncbitaxonomy 0.3.0
[INFO] tweaked toml for crates.io crate ncbitaxonomy 0.3.0 written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate crates.io crate ncbitaxonomy 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+bd0bacc694d7d8175804bb6f690cb846bfa4a9ee" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 2e2fb204af97b7d323779b17ec7dfd1153454ca456c8173076a44ddc240d86ca
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "2e2fb204af97b7d323779b17ec7dfd1153454ca456c8173076a44ddc240d86ca"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling libc v0.2.65
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]     Checking scopeguard v0.3.3
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]     Checking nodrop v0.1.14
[INFO] [stderr]     Checking memoffset v0.2.1
[INFO] [stderr]     Checking stable_deref_trait v1.1.1
[INFO] [stderr]     Checking smallvec v0.6.12
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]     Checking rustc-demangle v0.1.16
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling failure_derive v0.1.6
[INFO] [stderr]     Checking regex-syntax v0.6.12
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]     Checking rawpointer v0.1.0
[INFO] [stderr]     Checking quick-error v1.2.2
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]     Checking itoa v0.4.4
[INFO] [stderr]     Checking adler32 v1.0.4
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking scoped_threadpool v0.1.9
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking thread_local v0.3.6
[INFO] [stderr]     Checking crossbeam-utils v0.6.6
[INFO] [stderr]     Checking owning_ref v0.4.0
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]     Checking textwrap v0.10.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]     Checking byteorder v1.3.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.6
[INFO] [stderr]     Checking arrayvec v0.4.12
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking miniz_oxide v0.3.5
[INFO] [stderr]    Compiling error-chain v0.12.1
[INFO] [stderr]     Checking lock_api v0.1.5
[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]     Checking crossbeam-epoch v0.5.2
[INFO] [stderr]     Checking crossbeam-epoch v0.6.1
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking memchr v2.2.1
[INFO] [stderr]     Checking rand v0.5.6
[INFO] [stderr]     Checking backtrace-sys v0.1.32
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]     Checking slice-deque v0.1.16
[INFO] [stderr]     Checking atty v0.2.13
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling parking_lot_core v0.3.1
[INFO] [stderr]     Checking flate2 v1.0.12
[INFO] [stderr]     Checking crossbeam-deque v0.5.2
[INFO] [stderr]     Checking backtrace v0.3.40
[INFO] [stderr]     Checking aho-corasick v0.7.6
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]    Compiling syn v1.0.7
[INFO] [stderr]     Checking buf_redux v0.7.1
[INFO] [stderr]     Checking rand v0.3.23
[INFO] [stderr]     Checking statrs v0.9.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking regex v1.3.1
[INFO] [stderr]     Checking parking_lot v0.6.4
[INFO] [stderr]     Checking crossbeam-channel v0.2.6
[INFO] [stderr]     Checking ndarray v0.12.1
[INFO] [stderr]     Checking crossbeam v0.4.1
[INFO] [stderr]    Compiling synstructure v0.12.1
[INFO] [stderr]    Compiling serde_derive v1.0.102
[INFO] [stderr]     Checking failure v0.1.6
[INFO] [stderr]     Checking indextree v3.3.0
[INFO] [stderr]     Checking serde v1.0.102
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking seq_io v0.3.0
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]     Checking ncbitaxonomy v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string()
[INFO] [stderr]   --> src/lib.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | /     error_chain! {
[INFO] [stderr] 11 | |         foreign_links {
[INFO] [stderr] 12 | |             Io(::std::io::Error) #[doc = "Io"];
[INFO] [stderr] 13 | |             ParseIntError(::std::num::ParseIntError);
[INFO] [stderr] ...  |
[INFO] [stderr] 20 | |         }
[INFO] [stderr] 21 | |     }
[INFO] [stderr]    | |_____^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string()
[INFO] [stderr]   --> src/lib.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | /     error_chain! {
[INFO] [stderr] 11 | |         foreign_links {
[INFO] [stderr] 12 | |             Io(::std::io::Error) #[doc = "Io"];
[INFO] [stderr] 13 | |             ParseIntError(::std::num::ParseIntError);
[INFO] [stderr] ...  |
[INFO] [stderr] 20 | |         }
[INFO] [stderr] 21 | |     }
[INFO] [stderr]    | |_____^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string()
[INFO] [stderr]   --> src/lib.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | /     error_chain! {
[INFO] [stderr] 11 | |         foreign_links {
[INFO] [stderr] 12 | |             Io(::std::io::Error) #[doc = "Io"];
[INFO] [stderr] 13 | |             ParseIntError(::std::num::ParseIntError);
[INFO] [stderr] ...  |
[INFO] [stderr] 20 | |         }
[INFO] [stderr] 21 | |     }
[INFO] [stderr]    | |_____^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string()
[INFO] [stderr]   --> src/lib.rs:10:5
[INFO] [stderr]    |
[INFO] [stderr] 10 | /     error_chain! {
[INFO] [stderr] 11 | |         foreign_links {
[INFO] [stderr] 12 | |             Io(::std::io::Error) #[doc = "Io"];
[INFO] [stderr] 13 | |             ParseIntError(::std::num::ParseIntError);
[INFO] [stderr] ...  |
[INFO] [stderr] 20 | |         }
[INFO] [stderr] 21 | |     }
[INFO] [stderr]    | |_____^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary trailing semicolon
[INFO] [stderr]    --> src/bin/taxonomy_filter_fastq.rs:155:60
[INFO] [stderr]     |
[INFO] [stderr] 155 |         let record = result.expect("Error reading record");;
[INFO] [stderr]     |                                                            ^ help: remove this semicolon
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary trailing semicolon
[INFO] [stderr]    --> src/bin/taxonomy_filter_fastq.rs:155:60
[INFO] [stderr]     |
[INFO] [stderr] 155 |         let record = result.expect("Error reading record");;
[INFO] [stderr]     |                                                            ^ help: remove this semicolon
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 14s
[INFO] running `"docker" "inspect" "2e2fb204af97b7d323779b17ec7dfd1153454ca456c8173076a44ddc240d86ca"`
[INFO] running `"docker" "rm" "-f" "2e2fb204af97b7d323779b17ec7dfd1153454ca456c8173076a44ddc240d86ca"`
[INFO] [stdout] 2e2fb204af97b7d323779b17ec7dfd1153454ca456c8173076a44ddc240d86ca