[INFO] updating cached repository https://github.com/brainstorm/bio-index-formats [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 21a6254d2bce3ce68aeeee3eb673264cecb036ce [INFO] checking brainstorm/bio-index-formats against master#45d050cde277b22a755847338f2acc2c7b834141 for pr-71393 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fbio-index-formats" "/workspace/builds/worker-11/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/brainstorm/bio-index-formats on toolchain 45d050cde277b22a755847338f2acc2c7b834141 [INFO] running `"/workspace/cargo-home/bin/cargo" "+45d050cde277b22a755847338f2acc2c7b834141" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/brainstorm/bio-index-formats [INFO] finished tweaking git repo https://github.com/brainstorm/bio-index-formats [INFO] tweaked toml for git repo https://github.com/brainstorm/bio-index-formats written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/brainstorm/bio-index-formats already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+45d050cde277b22a755847338f2acc2c7b834141" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] error: the lock file /workspace/builds/worker-11/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `"/workspace/cargo-home/bin/cargo" "+45d050cde277b22a755847338f2acc2c7b834141" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+45d050cde277b22a755847338f2acc2c7b834141" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+45d050cde277b22a755847338f2acc2c7b834141" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d93c70c9110d67296803494464e12ac0aba4aaeabc866bd762b566a07fb2d248 [INFO] running `"docker" "start" "-a" "d93c70c9110d67296803494464e12ac0aba4aaeabc866bd762b566a07fb2d248"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Checking cfg-if v0.1.9 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Checking rustc-demangle v0.1.16 [INFO] [stderr] Checking nodrop v0.1.14 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Checking static_assertions v0.3.4 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking percent-encoding v2.1.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling backtrace-sys v0.1.37 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling lexical-core v0.6.7 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling syn v1.0.18 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling clang-sys v0.28.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking backtrace v0.3.41 [INFO] [stderr] Compiling cexpr v0.3.6 [INFO] [stderr] Compiling regex v1.3.7 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling serde_derive v1.0.106 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Compiling rust-htslib v0.26.1 [INFO] [stderr] Checking bio_index_formats v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 15s [INFO] running `"docker" "inspect" "d93c70c9110d67296803494464e12ac0aba4aaeabc866bd762b566a07fb2d248"` [INFO] running `"docker" "rm" "-f" "d93c70c9110d67296803494464e12ac0aba4aaeabc866bd762b566a07fb2d248"` [INFO] [stdout] d93c70c9110d67296803494464e12ac0aba4aaeabc866bd762b566a07fb2d248