[INFO] crate rust-htslib 0.30.0 is already in cache [INFO] testing rust-htslib-0.30.0 against try#41997647ba6a77908f6ef64401414feb00bccf16 for pr-71274 [INFO] extracting crate rust-htslib 0.30.0 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate rust-htslib 0.30.0 on toolchain 41997647ba6a77908f6ef64401414feb00bccf16 [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate rust-htslib 0.30.0 [INFO] finished tweaking crates.io crate rust-htslib 0.30.0 [INFO] tweaked toml for crates.io crate rust-htslib 0.30.0 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2eb0e0e175c41423487fca1564a42b976b197b13ed4d7519c19016ccf45fb827 [INFO] running `"docker" "start" "-a" "2eb0e0e175c41423487fca1564a42b976b197b13ed4d7519c19016ccf45fb827"` [INFO] [stderr] Compiling cc v1.0.51 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling libc v0.2.69 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling serde v1.0.106 [INFO] [stderr] Compiling smallvec v1.3.0 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling unicode-normalization v0.1.12 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling openssl-sys v0.9.55 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling curl-sys v0.4.30+curl-7.69.1 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Compiling url v2.1.1 [INFO] [stderr] Compiling regex v1.3.7 [INFO] [stderr] Compiling clang-sys v0.29.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling serde_derive v1.0.106 [INFO] [stderr] Compiling snafu-derive v0.6.6 [INFO] [stderr] Compiling snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling rust-htslib v0.30.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 33s [INFO] running `"docker" "inspect" "2eb0e0e175c41423487fca1564a42b976b197b13ed4d7519c19016ccf45fb827"` [INFO] running `"docker" "rm" "-f" "2eb0e0e175c41423487fca1564a42b976b197b13ed4d7519c19016ccf45fb827"` [INFO] [stdout] 2eb0e0e175c41423487fca1564a42b976b197b13ed4d7519c19016ccf45fb827 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a2686d1858b7c17b15055d790b8f27800fde975cafa3edea6cc4a0eec8dd67e0 [INFO] running `"docker" "start" "-a" "a2686d1858b7c17b15055d790b8f27800fde975cafa3edea6cc4a0eec8dd67e0"` [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling ryu v1.0.3 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling pretty_assertions v0.6.1 [INFO] [stderr] Compiling serde_json v1.0.51 [INFO] [stderr] Compiling bincode v1.2.1 [INFO] [stderr] Compiling tempdir v0.3.7 [INFO] [stderr] Compiling rust-htslib v0.30.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 14.43s [INFO] running `"docker" "inspect" "a2686d1858b7c17b15055d790b8f27800fde975cafa3edea6cc4a0eec8dd67e0"` [INFO] running `"docker" "rm" "-f" "a2686d1858b7c17b15055d790b8f27800fde975cafa3edea6cc4a0eec8dd67e0"` [INFO] [stdout] a2686d1858b7c17b15055d790b8f27800fde975cafa3edea6cc4a0eec8dd67e0 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 11c73568c3bac3c6b33956e27ca3b59c639603cfb9f4746791b38b310d7a66b8 [INFO] running `"docker" "start" "-a" "11c73568c3bac3c6b33956e27ca3b59c639603cfb9f4746791b38b310d7a66b8"` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.17s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rust_htslib-5ef2e53843aef887 [INFO] [stdout] [INFO] [stdout] running 74 tests [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stderr] [W::hts_idx_load3] The index file is older than the data file: test/test.bam.bai [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high ... ok [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: Open { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:1761:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563fca9630e4 - backtrace::backtrace::libunwind::trace::h61666fa4b9834a45 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x563fca9630e4 - backtrace::backtrace::trace_unsynchronized::h01d3725fb5da8653 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x563fca9630e4 - std::sys_common::backtrace::_print_fmt::h5c7c4751bc296f90 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x563fca9630e4 - ::fmt::h7729313ad2d729c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x563fca98dc5c - core::fmt::write::hb0049f6c12bdaffc [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x563fca5d55a5 - std::io::Write::write_fmt::h5d052af13df32ea6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x563fca95ccb1 - std::io::impls::>::write_fmt::h8fe8a9bdc421b4b6 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x563fca965f15 - std::sys_common::backtrace::_print::ha087cac92e84a414 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x563fca965f15 - std::sys_common::backtrace::print::h6b013d3bfe6cbcb8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x563fca965f15 - std::panicking::default_hook::{{closure}}::h016d7de02def2736 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x563fca965bfb - std::panicking::default_hook::h9386f7e484840463 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x563fca966572 - std::panicking::rust_panic_with_hook::h3846eb1b2e5a9312 [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x563fca96615b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x563fca98bd01 - core::panicking::panic_fmt::hc5953a7331f9805c [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x563fca98bb23 - core::option::expect_none_failed::hf2c575a7b931ce1f [INFO] [stdout] at src/libcore/option.rs:1268 [INFO] [stdout] 15: 0x563fca550063 - core::result::Result::unwrap::h3762c9b86f6ba4a8 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x563fca5068ef - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::h72fc93a694c9b1fd [INFO] [stdout] at src/bam/mod.rs:1761 [INFO] [stdout] 17: 0x563fca50632d - rust_htslib::bam::tests::test_sam_writer_example::h3f8781c0706469c4 [INFO] [stdout] at src/bam/mod.rs:1784 [INFO] [stdout] 18: 0x563fca5062aa - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::he4a33011c30e412e [INFO] [stdout] at src/bam/mod.rs:1754 [INFO] [stdout] 19: 0x563fca522e6e - core::ops::function::FnOnce::call_once::h0ced7fce37775e9e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 20: 0x563fca5e149f - as core::ops::function::FnOnce>::call_once::h1f6ee40732e80908 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 21: 0x563fca5fca9e - as core::ops::function::FnOnce<()>>::call_once::h85dff111be9c2dc6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x563fca5fca9e - std::panicking::try::do_call::hee6f5a4bef67c840 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 23: 0x563fca5fca9e - std::panicking::try::h3384d3b948e84dbc [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 24: 0x563fca5fca9e - std::panic::catch_unwind::h5ae91218e578066d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x563fca5fca9e - test::run_test_in_process::he37a49587889b910 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x563fca5fca9e - test::run_test::run_test_inner::{{closure}}::h4f0d25136ca480c2 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x563fca5d4a56 - std::sys_common::backtrace::__rust_begin_short_backtrace::h969eceda34247af3 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x563fca5d9de5 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h912007997cb04e92 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x563fca5d9de5 - as core::ops::function::FnOnce<()>>::call_once::h8795d8b7bd223988 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x563fca5d9de5 - std::panicking::try::do_call::hb29b86f86d4d722e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 31: 0x563fca5d9de5 - std::panicking::try::h4bfefb3eddc0d900 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 32: 0x563fca5d9de5 - std::panic::catch_unwind::h774c24d4b38d5828 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x563fca5d9de5 - std::thread::Builder::spawn_unchecked::{{closure}}::ha50a32fa99413dde [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x563fca5d9de5 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dacb8f28d699f86 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 35: 0x563fca9587df - as core::ops::function::FnOnce>::call_once::h7deaeeba480c6ce2 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 36: 0x563fca96d6c3 - as core::ops::function::FnOnce>::call_once::h968b1dfb87756523 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 37: 0x563fca96d6c3 - std::sys::unix::thread::Thread::new::thread_start::h2399addeb6370595 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7f8eed7e06db - start_thread [INFO] [stdout] 39: 0x7f8eed2f188f - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: WriteIndex', src/bam/index.rs:72:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563fca9630e4 - backtrace::backtrace::libunwind::trace::h61666fa4b9834a45 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x563fca9630e4 - backtrace::backtrace::trace_unsynchronized::h01d3725fb5da8653 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x563fca9630e4 - std::sys_common::backtrace::_print_fmt::h5c7c4751bc296f90 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x563fca9630e4 - ::fmt::h7729313ad2d729c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x563fca98dc5c - core::fmt::write::hb0049f6c12bdaffc [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x563fca5d55a5 - std::io::Write::write_fmt::h5d052af13df32ea6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x563fca95ccb1 - std::io::impls::>::write_fmt::h8fe8a9bdc421b4b6 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x563fca965f15 - std::sys_common::backtrace::_print::ha087cac92e84a414 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x563fca965f15 - std::sys_common::backtrace::print::h6b013d3bfe6cbcb8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x563fca965f15 - std::panicking::default_hook::{{closure}}::h016d7de02def2736 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x563fca965bfb - std::panicking::default_hook::h9386f7e484840463 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x563fca966572 - std::panicking::rust_panic_with_hook::h3846eb1b2e5a9312 [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x563fca96615b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x563fca98bd01 - core::panicking::panic_fmt::hc5953a7331f9805c [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x563fca98bb23 - core::option::expect_none_failed::hf2c575a7b931ce1f [INFO] [stdout] at src/libcore/option.rs:1268 [INFO] [stdout] 15: 0x563fca550d6a - core::result::Result::unwrap::haaa85e876c654ad5 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/result.rs:1005 [INFO] [stdout] 16: 0x563fca5bb0b9 - rust_htslib::bam::index::tests::test_index_build::h049287d57d5d5bdc [INFO] [stdout] at src/bam/index.rs:72 [INFO] [stdout] 17: 0x563fca5bafea - rust_htslib::bam::index::tests::test_index_build::{{closure}}::hb07493ea0472b044 [INFO] [stdout] at src/bam/index.rs:67 [INFO] [stdout] 18: 0x563fca52349e - core::ops::function::FnOnce::call_once::h6516af26e9c23a9e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 19: 0x563fca5e149f - as core::ops::function::FnOnce>::call_once::h1f6ee40732e80908 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 20: 0x563fca5fca9e - as core::ops::function::FnOnce<()>>::call_once::h85dff111be9c2dc6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 21: 0x563fca5fca9e - std::panicking::try::do_call::hee6f5a4bef67c840 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 22: 0x563fca5fca9e - std::panicking::try::h3384d3b948e84dbc [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 23: 0x563fca5fca9e - std::panic::catch_unwind::h5ae91218e578066d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 24: 0x563fca5fca9e - test::run_test_in_process::he37a49587889b910 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 25: 0x563fca5fca9e - test::run_test::run_test_inner::{{closure}}::h4f0d25136ca480c2 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 26: 0x563fca5d4a56 - std::sys_common::backtrace::__rust_begin_short_backtrace::h969eceda34247af3 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 27: 0x563fca5d9de5 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h912007997cb04e92 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:475 [INFO] [stdout] 28: 0x563fca5d9de5 - as core::ops::function::FnOnce<()>>::call_once::h8795d8b7bd223988 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 29: 0x563fca5d9de5 - std::panicking::try::do_call::hb29b86f86d4d722e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 30: 0x563fca5d9de5 - std::panicking::try::h4bfefb3eddc0d900 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 31: 0x563fca5d9de5 - std::panic::catch_unwind::h774c24d4b38d5828 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 32: 0x563fca5d9de5 - std::thread::Builder::spawn_unchecked::{{closure}}::ha50a32fa99413dde [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:474 [INFO] [stdout] 33: 0x563fca5d9de5 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dacb8f28d699f86 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 34: 0x563fca9587df - as core::ops::function::FnOnce>::call_once::h7deaeeba480c6ce2 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 35: 0x563fca96d6c3 - as core::ops::function::FnOnce>::call_once::h968b1dfb87756523 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 36: 0x563fca96d6c3 - std::sys::unix::thread::Thread::new::thread_start::h2399addeb6370595 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 37: 0x7f8eed7e06db - start_thread [INFO] [stdout] 38: 0x7f8eed2f188f - __clone [INFO] [stdout] 39: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 72 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `"docker" "inspect" "11c73568c3bac3c6b33956e27ca3b59c639603cfb9f4746791b38b310d7a66b8"` [INFO] running `"docker" "rm" "-f" "11c73568c3bac3c6b33956e27ca3b59c639603cfb9f4746791b38b310d7a66b8"` [INFO] [stdout] 11c73568c3bac3c6b33956e27ca3b59c639603cfb9f4746791b38b310d7a66b8