[INFO] crate ncbitaxonomy 0.2.2 is already in cache [INFO] testing ncbitaxonomy-0.2.2 against try#41997647ba6a77908f6ef64401414feb00bccf16 for pr-71274 [INFO] extracting crate ncbitaxonomy 0.2.2 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate ncbitaxonomy 0.2.2 on toolchain 41997647ba6a77908f6ef64401414feb00bccf16 [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate ncbitaxonomy 0.2.2 [INFO] finished tweaking crates.io crate ncbitaxonomy 0.2.2 [INFO] tweaked toml for crates.io crate ncbitaxonomy 0.2.2 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 0.2.2 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 148ca1145136d0adb2519c3c37969856efe95bcad50b81d2a45aa87ca9354c83 [INFO] running `"docker" "start" "-a" "148ca1145136d0adb2519c3c37969856efe95bcad50b81d2a45aa87ca9354c83"` [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling syn v1.0.7 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling failure_derive v0.1.6 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling adler32 v1.0.4 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling owning_ref v0.4.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling error-chain v0.12.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling miniz_oxide v0.3.5 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling flate2 v1.0.12 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.1 [INFO] [stderr] Compiling serde_derive v1.0.102 [INFO] [stderr] Compiling failure v0.1.6 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling serde v1.0.102 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling ncbitaxonomy v0.2.2 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bin/taxonomy_filter_fastq.rs:155:60 [INFO] [stderr] | [INFO] [stderr] 155 | let record = result.expect("Error reading record");; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 25s [INFO] running `"docker" "inspect" "148ca1145136d0adb2519c3c37969856efe95bcad50b81d2a45aa87ca9354c83"` [INFO] running `"docker" "rm" "-f" "148ca1145136d0adb2519c3c37969856efe95bcad50b81d2a45aa87ca9354c83"` [INFO] [stdout] 148ca1145136d0adb2519c3c37969856efe95bcad50b81d2a45aa87ca9354c83 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f811b59b05566b10e977aebb016ceb549514b96c4909ff2b962164dc130f107f [INFO] running `"docker" "start" "-a" "f811b59b05566b10e977aebb016ceb549514b96c4909ff2b962164dc130f107f"` [INFO] [stderr] Compiling ncbitaxonomy v0.2.2 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bin/taxonomy_filter_fastq.rs:155:60 [INFO] [stderr] | [INFO] [stderr] 155 | let record = result.expect("Error reading record");; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.40s [INFO] running `"docker" "inspect" "f811b59b05566b10e977aebb016ceb549514b96c4909ff2b962164dc130f107f"` [INFO] running `"docker" "rm" "-f" "f811b59b05566b10e977aebb016ceb549514b96c4909ff2b962164dc130f107f"` [INFO] [stdout] f811b59b05566b10e977aebb016ceb549514b96c4909ff2b962164dc130f107f [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] fea52ebc10b78fa8c35c38ef833181f541eaf17bcded2215f2eee7e94efb79ab [INFO] running `"docker" "start" "-a" "fea52ebc10b78fa8c35c38ef833181f541eaf17bcded2215f2eee7e94efb79ab"` [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bin/taxonomy_filter_fastq.rs:155:60 [INFO] [stderr] | [INFO] [stderr] 155 | let record = result.expect("Error reading record");; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 1 warning emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.28s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/ncbitaxonomy-9135af1c6a9134b2 [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::taxid_descendants ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_fastq-2309d4668cf6ffb0 [INFO] [stdout] test tests::contains_id ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-f57b03e8d21c0b40 [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiTaxonomy::from_ncbi_files (line 49) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "fea52ebc10b78fa8c35c38ef833181f541eaf17bcded2215f2eee7e94efb79ab"` [INFO] running `"docker" "rm" "-f" "fea52ebc10b78fa8c35c38ef833181f541eaf17bcded2215f2eee7e94efb79ab"` [INFO] [stdout] fea52ebc10b78fa8c35c38ef833181f541eaf17bcded2215f2eee7e94efb79ab