[INFO] updating cached repository https://github.com/mttmartin/anneal_predictor [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 8015bc6eaafedea32d296c1982070e2073c44112 [INFO] testing mttmartin/anneal_predictor against try#41997647ba6a77908f6ef64401414feb00bccf16 for pr-71274 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor" "/workspace/builds/worker-6/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mttmartin/anneal_predictor on toolchain 41997647ba6a77908f6ef64401414feb00bccf16 [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] finished tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] tweaked toml for git repo https://github.com/mttmartin/anneal_predictor written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/mttmartin/anneal_predictor already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 4fa9c86765191219bea1c852bbeec8a3c22178924f16df7b75efdd1ee333b260 [INFO] running `"docker" "start" "-a" "4fa9c86765191219bea1c852bbeec8a3c22178924f16df7b75efdd1ee333b260"` [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:306:7 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:9:11 [INFO] [stderr] | [INFO] [stderr] 9 | let mut deltaS = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:10:11 [INFO] [stderr] | [INFO] [stderr] 10 | let mut deltaH = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:278:7 [INFO] [stderr] | [INFO] [stderr] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:282:4 [INFO] [stderr] | [INFO] [stderr] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:284:7 [INFO] [stderr] | [INFO] [stderr] 284 | let deltaH = 9.62; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:285:7 [INFO] [stderr] | [INFO] [stderr] 285 | let deltaS = 17.15/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:286:7 [INFO] [stderr] | [INFO] [stderr] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:289:7 [INFO] [stderr] | [INFO] [stderr] 289 | let deltaH = 0.4184; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:290:7 [INFO] [stderr] | [INFO] [stderr] 290 | let deltaS = -11.72/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:291:7 [INFO] [stderr] | [INFO] [stderr] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: method `calc_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:299:4 [INFO] [stderr] | [INFO] [stderr] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:300:10 [INFO] [stderr] | [INFO] [stderr] 300 | let mut deltaG = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:303:11 [INFO] [stderr] | [INFO] [stderr] 303 | let mut initiation_deltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:306:11 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:320:5 [INFO] [stderr] | [INFO] [stderr] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:321:11 [INFO] [stderr] | [INFO] [stderr] 321 | let mut lowestDeltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:324:8 [INFO] [stderr] | [INFO] [stderr] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:339:6 [INFO] [stderr] | [INFO] [stderr] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: 20 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.39s [INFO] running `"docker" "inspect" "4fa9c86765191219bea1c852bbeec8a3c22178924f16df7b75efdd1ee333b260"` [INFO] running `"docker" "rm" "-f" "4fa9c86765191219bea1c852bbeec8a3c22178924f16df7b75efdd1ee333b260"` [INFO] [stdout] 4fa9c86765191219bea1c852bbeec8a3c22178924f16df7b75efdd1ee333b260 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 06a8b842c0b0455c00124330a579e98f314d7bdab49b26b0caa6ffcfb1e8a81b [INFO] running `"docker" "start" "-a" "06a8b842c0b0455c00124330a579e98f314d7bdab49b26b0caa6ffcfb1e8a81b"` [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:306:7 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:9:11 [INFO] [stderr] | [INFO] [stderr] 9 | let mut deltaS = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:10:11 [INFO] [stderr] | [INFO] [stderr] 10 | let mut deltaH = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:278:7 [INFO] [stderr] | [INFO] [stderr] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:282:4 [INFO] [stderr] | [INFO] [stderr] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:284:7 [INFO] [stderr] | [INFO] [stderr] 284 | let deltaH = 9.62; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:285:7 [INFO] [stderr] | [INFO] [stderr] 285 | let deltaS = 17.15/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:286:7 [INFO] [stderr] | [INFO] [stderr] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:289:7 [INFO] [stderr] | [INFO] [stderr] 289 | let deltaH = 0.4184; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:290:7 [INFO] [stderr] | [INFO] [stderr] 290 | let deltaS = -11.72/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:291:7 [INFO] [stderr] | [INFO] [stderr] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: method `calc_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:299:4 [INFO] [stderr] | [INFO] [stderr] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:300:10 [INFO] [stderr] | [INFO] [stderr] 300 | let mut deltaG = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:303:11 [INFO] [stderr] | [INFO] [stderr] 303 | let mut initiation_deltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:306:11 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:320:5 [INFO] [stderr] | [INFO] [stderr] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:321:11 [INFO] [stderr] | [INFO] [stderr] 321 | let mut lowestDeltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:324:8 [INFO] [stderr] | [INFO] [stderr] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:339:6 [INFO] [stderr] | [INFO] [stderr] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:354:7 [INFO] [stderr] | [INFO] [stderr] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: 21 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.35s [INFO] running `"docker" "inspect" "06a8b842c0b0455c00124330a579e98f314d7bdab49b26b0caa6ffcfb1e8a81b"` [INFO] running `"docker" "rm" "-f" "06a8b842c0b0455c00124330a579e98f314d7bdab49b26b0caa6ffcfb1e8a81b"` [INFO] [stdout] 06a8b842c0b0455c00124330a579e98f314d7bdab49b26b0caa6ffcfb1e8a81b [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ece56fafc4fe22b39547fd4a7509b15830d58b27ef321c52f6ae73163e5c4e0c [INFO] running `"docker" "start" "-a" "ece56fafc4fe22b39547fd4a7509b15830d58b27ef321c52f6ae73163e5c4e0c"` [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:306:7 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:9:11 [INFO] [stderr] | [INFO] [stderr] 9 | let mut deltaS = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:10:11 [INFO] [stderr] | [INFO] [stderr] 10 | let mut deltaH = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:278:7 [INFO] [stderr] | [INFO] [stderr] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:282:4 [INFO] [stderr] | [INFO] [stderr] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:284:7 [INFO] [stderr] | [INFO] [stderr] 284 | let deltaH = 9.62; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:285:7 [INFO] [stderr] | [INFO] [stderr] 285 | let deltaS = 17.15/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:286:7 [INFO] [stderr] | [INFO] [stderr] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:289:7 [INFO] [stderr] | [INFO] [stderr] 289 | let deltaH = 0.4184; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:290:7 [INFO] [stderr] | [INFO] [stderr] 290 | let deltaS = -11.72/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:291:7 [INFO] [stderr] | [INFO] [stderr] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: method `calc_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:299:4 [INFO] [stderr] | [INFO] [stderr] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:300:10 [INFO] [stderr] | [INFO] [stderr] 300 | let mut deltaG = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:303:11 [INFO] [stderr] | [INFO] [stderr] 303 | let mut initiation_deltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:306:11 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:320:5 [INFO] [stderr] | [INFO] [stderr] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:321:11 [INFO] [stderr] | [INFO] [stderr] 321 | let mut lowestDeltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:324:8 [INFO] [stderr] | [INFO] [stderr] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:339:6 [INFO] [stderr] | [INFO] [stderr] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:354:7 [INFO] [stderr] | [INFO] [stderr] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: 21 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/anneal_predictor-08836454b70fd749 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::known_example ... FAILED [INFO] [stderr] error: test failed, to rerun pass '--bin anneal_predictor' [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::known_example stdout ---- [INFO] [stdout] template piece: "CGTTGA" [INFO] [stdout] thread 'tests::known_example' panicked at 'assertion failed: lowest_delta_G <= acceptable_range.start && [INFO] [stdout] lowest_delta_G > acceptable_range.end', src/main.rs:356:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5651e8b06014 - backtrace::backtrace::libunwind::trace::h61666fa4b9834a45 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x5651e8b06014 - backtrace::backtrace::trace_unsynchronized::h01d3725fb5da8653 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x5651e8b06014 - std::sys_common::backtrace::_print_fmt::h5c7c4751bc296f90 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x5651e8b06014 - ::fmt::h7729313ad2d729c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x5651e8b2ec2c - core::fmt::write::hb0049f6c12bdaffc [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x5651e8ab9ca5 - std::io::Write::write_fmt::h5d052af13df32ea6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x5651e8b00631 - std::io::impls::>::write_fmt::h8fe8a9bdc421b4b6 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x5651e8b088e5 - std::sys_common::backtrace::_print::ha087cac92e84a414 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x5651e8b088e5 - std::sys_common::backtrace::print::h6b013d3bfe6cbcb8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x5651e8b088e5 - std::panicking::default_hook::{{closure}}::h016d7de02def2736 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x5651e8b085cb - std::panicking::default_hook::h9386f7e484840463 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x5651e8b08f42 - std::panicking::rust_panic_with_hook::h3846eb1b2e5a9312 [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x5651e8ab716d - std::panicking::begin_panic::haff59725398160d0 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:438 [INFO] [stdout] 13: 0x5651e8ab852b - anneal_predictor::tests::known_example::he9c9728ecbf3b693 [INFO] [stdout] at src/main.rs:356 [INFO] [stdout] 14: 0x5651e8ab837a - anneal_predictor::tests::known_example::{{closure}}::h5d08aa0bed59e2c0 [INFO] [stdout] at src/main.rs:349 [INFO] [stdout] 15: 0x5651e8ab328e - core::ops::function::FnOnce::call_once::h9dca46684a4a0f9d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 16: 0x5651e8ac5b9f - as core::ops::function::FnOnce>::call_once::h1f6ee40732e80908 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 17: 0x5651e8ae119e - as core::ops::function::FnOnce<()>>::call_once::h85dff111be9c2dc6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 18: 0x5651e8ae119e - std::panicking::try::do_call::hee6f5a4bef67c840 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 19: 0x5651e8ae119e - std::panicking::try::h3384d3b948e84dbc [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 20: 0x5651e8ae119e - std::panic::catch_unwind::h5ae91218e578066d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 21: 0x5651e8ae119e - test::run_test_in_process::he37a49587889b910 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 22: 0x5651e8ae119e - test::run_test::run_test_inner::{{closure}}::h4f0d25136ca480c2 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 23: 0x5651e8ab9156 - std::sys_common::backtrace::__rust_begin_short_backtrace::h969eceda34247af3 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 24: 0x5651e8abe4e5 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h912007997cb04e92 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:475 [INFO] [stdout] 25: 0x5651e8abe4e5 - as core::ops::function::FnOnce<()>>::call_once::h8795d8b7bd223988 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 26: 0x5651e8abe4e5 - std::panicking::try::do_call::hb29b86f86d4d722e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 27: 0x5651e8abe4e5 - std::panicking::try::h4bfefb3eddc0d900 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 28: 0x5651e8abe4e5 - std::panic::catch_unwind::h774c24d4b38d5828 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 29: 0x5651e8abe4e5 - std::thread::Builder::spawn_unchecked::{{closure}}::ha50a32fa99413dde [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:474 [INFO] [stdout] 30: 0x5651e8abe4e5 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dacb8f28d699f86 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 31: 0x5651e8afc83f - as core::ops::function::FnOnce>::call_once::h7deaeeba480c6ce2 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 32: 0x5651e8b0f723 - as core::ops::function::FnOnce>::call_once::h968b1dfb87756523 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 33: 0x5651e8b0f723 - std::sys::unix::thread::Thread::new::thread_start::h2399addeb6370595 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 34: 0x7f3cd40986db - start_thread [INFO] [stdout] 35: 0x7f3cd3ba988f - __clone [INFO] [stdout] 36: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::known_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "ece56fafc4fe22b39547fd4a7509b15830d58b27ef321c52f6ae73163e5c4e0c"` [INFO] running `"docker" "rm" "-f" "ece56fafc4fe22b39547fd4a7509b15830d58b27ef321c52f6ae73163e5c4e0c"` [INFO] [stdout] ece56fafc4fe22b39547fd4a7509b15830d58b27ef321c52f6ae73163e5c4e0c