[INFO] updating cached repository https://github.com/StephanHeijl/global-supertrees [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 60f3ba049bd818be391b122113e956c8fcf55339 [INFO] testing StephanHeijl/global-supertrees against try#41997647ba6a77908f6ef64401414feb00bccf16 for pr-71274 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FStephanHeijl%2Fglobal-supertrees" "/workspace/builds/worker-8/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/StephanHeijl/global-supertrees on toolchain 41997647ba6a77908f6ef64401414feb00bccf16 [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/StephanHeijl/global-supertrees [INFO] finished tweaking git repo https://github.com/StephanHeijl/global-supertrees [INFO] tweaked toml for git repo https://github.com/StephanHeijl/global-supertrees written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/StephanHeijl/global-supertrees already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 66e5e7bf71fbab4f4a63db1ab4ba8f8cebac0f74f4c61d6764c88e507dbd6f39 [INFO] running `"docker" "start" "-a" "66e5e7bf71fbab4f4a63db1ab4ba8f8cebac0f74f4c61d6764c88e507dbd6f39"` [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling unindent v0.1.5 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling spin v0.5.2 [INFO] [stderr] Compiling half v1.4.0 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling bincode v1.2.0 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling pyo3-derive-backend v0.8.1 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling proc-macro-hack v0.5.11 [INFO] [stderr] Compiling inventory-impl v0.1.4 [INFO] [stderr] Compiling ghost v0.1.1 [INFO] [stderr] Compiling ctor v0.1.12 [INFO] [stderr] Compiling pyo3cls v0.8.1 [INFO] [stderr] Compiling inventory v0.1.4 [INFO] [stderr] Compiling paste-impl v0.1.6 [INFO] [stderr] Compiling indoc-impl v0.3.4 [INFO] [stderr] Compiling indoc v0.3.4 [INFO] [stderr] Compiling paste v0.1.6 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling serde_json v1.0.41 [INFO] [stderr] Compiling pyo3 v0.8.1 [INFO] [stderr] Compiling numpy v0.7.0 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] [INFO] [stderr] warning: 8 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/bin/bin.rs:1:13 [INFO] [stderr] | [INFO] [stderr] 1 | #[macro_use(s)] [INFO] [stderr] | ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::f32` [INFO] [stderr] --> src/bin/bin.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use std::f32; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rand::prelude::*` [INFO] [stderr] --> src/bin/bin.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use rand::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/bin/bin.rs:109:13 [INFO] [stderr] | [INFO] [stderr] 109 | out_tree_file.write_all(tree.to_newick().as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 12s [INFO] running `"docker" "inspect" "66e5e7bf71fbab4f4a63db1ab4ba8f8cebac0f74f4c61d6764c88e507dbd6f39"` [INFO] running `"docker" "rm" "-f" "66e5e7bf71fbab4f4a63db1ab4ba8f8cebac0f74f4c61d6764c88e507dbd6f39"` [INFO] [stdout] 66e5e7bf71fbab4f4a63db1ab4ba8f8cebac0f74f4c61d6764c88e507dbd6f39 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 335ac524b5493d80d6bc9c979c36a42b1c58f9ab841fe16f2c0c28f127458f14 [INFO] running `"docker" "start" "-a" "335ac524b5493d80d6bc9c979c36a42b1c58f9ab841fe16f2c0c28f127458f14"` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] [INFO] [stderr] warning: 8 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/bin/bin.rs:1:13 [INFO] [stderr] | [INFO] [stderr] 1 | #[macro_use(s)] [INFO] [stderr] | ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::f32` [INFO] [stderr] --> src/bin/bin.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use std::f32; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rand::prelude::*` [INFO] [stderr] --> src/bin/bin.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use rand::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/bin/bin.rs:109:13 [INFO] [stderr] | [INFO] [stderr] 109 | out_tree_file.write_all(tree.to_newick().as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: value assigned to `mapping` is never read [INFO] [stderr] --> src/tests.rs:262:13 [INFO] [stderr] | [INFO] [stderr] 262 | let mut mapping : BTreeMap<[u8; 10], u32> = BTreeMap::new(); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_assignments)]` on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] [INFO] [stderr] warning: 9 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 11.07s [INFO] running `"docker" "inspect" "335ac524b5493d80d6bc9c979c36a42b1c58f9ab841fe16f2c0c28f127458f14"` [INFO] running `"docker" "rm" "-f" "335ac524b5493d80d6bc9c979c36a42b1c58f9ab841fe16f2c0c28f127458f14"` [INFO] [stdout] 335ac524b5493d80d6bc9c979c36a42b1c58f9ab841fe16f2c0c28f127458f14 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+41997647ba6a77908f6ef64401414feb00bccf16" "test" "--frozen"` [INFO] [stdout] 3e52ffd9b0a478e34860cb609b570543cb50a325cafead5d6fe67006b026c3e9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `"docker" "start" "-a" "3e52ffd9b0a478e34860cb609b570543cb50a325cafead5d6fe67006b026c3e9"` [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] [INFO] [stderr] warning: 8 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: value assigned to `mapping` is never read [INFO] [stderr] --> src/tests.rs:262:13 [INFO] [stderr] | [INFO] [stderr] 262 | let mut mapping : BTreeMap<[u8; 10], u32> = BTreeMap::new(); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_assignments)]` on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] [INFO] [stderr] warning: 9 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/bin/bin.rs:1:13 [INFO] [stderr] | [INFO] [stderr] 1 | #[macro_use(s)] [INFO] [stderr] | ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::f32` [INFO] [stderr] --> src/bin/bin.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use std::f32; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rand::prelude::*` [INFO] [stderr] --> src/bin/bin.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use rand::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/bin/bin.rs:109:13 [INFO] [stderr] | [INFO] [stderr] 109 | out_tree_file.write_all(tree.to_newick().as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/global_supertrees-c553a131c397a641 [INFO] [stdout] [INFO] [stdout] running 18 tests [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_to_newick ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_merge_trees ... FAILED [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] Started neighbour joining [INFO] [stdout] Started neighbour joining [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] Finished neighbour joining. [INFO] [stdout] Finished neighbour joining. [INFO] [stdout] ==(1)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(3)== [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_trees stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_trees' panicked at 'index out of bounds: the len is 2 but the index is 2', src/uniprot.rs:51:26 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x562c71c2bd14 - backtrace::backtrace::libunwind::trace::h61666fa4b9834a45 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x562c71c2bd14 - backtrace::backtrace::trace_unsynchronized::h01d3725fb5da8653 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x562c71c2bd14 - std::sys_common::backtrace::_print_fmt::h5c7c4751bc296f90 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x562c71c2bd14 - ::fmt::h7729313ad2d729c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x562c71c56c4c - core::fmt::write::hb0049f6c12bdaffc [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x562c719549f5 - std::io::Write::write_fmt::h5d052af13df32ea6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x562c71c261d1 - std::io::impls::>::write_fmt::h8fe8a9bdc421b4b6 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x562c71c2e5f5 - std::sys_common::backtrace::_print::ha087cac92e84a414 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x562c71c2e5f5 - std::sys_common::backtrace::print::h6b013d3bfe6cbcb8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x562c71c2e5f5 - std::panicking::default_hook::{{closure}}::h016d7de02def2736 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x562c71c2e2db - std::panicking::default_hook::h9386f7e484840463 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x562c71c2ec52 - std::panicking::rust_panic_with_hook::h3846eb1b2e5a9312 [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x562c71c2e83b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x562c71c54a11 - core::panicking::panic_fmt::hc5953a7331f9805c [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x562c71c549d2 - core::panicking::panic_bounds_check::hadd21164dc21efa2 [INFO] [stdout] at src/libcore/panicking.rs:69 [INFO] [stdout] 15: 0x562c71bf8912 - >::index::he1dd63cbebc72fce [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/slice/mod.rs:2872 [INFO] [stdout] 16: 0x562c71bf8833 - core::slice:: for [T]>::index::ha76196032469ef2f [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/slice/mod.rs:2732 [INFO] [stdout] 17: 0x562c71bf7275 - as core::ops::index::Index>::index::h58536c0cfec49571 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/vec.rs:1945 [INFO] [stdout] 18: 0x562c718221ef - global_supertrees::uniprot::load_mapping_file::h447feb35b6012ae4 [INFO] [stdout] at src/uniprot.rs:51 [INFO] [stdout] 19: 0x562c71805943 - global_supertrees::tests::tests::test_merge_trees::h35bcda83722e0e4d [INFO] [stdout] at src/tests.rs:271 [INFO] [stdout] 20: 0x562c7180583a - global_supertrees::tests::tests::test_merge_trees::{{closure}}::h917929813d7b7077 [INFO] [stdout] at src/tests.rs:261 [INFO] [stdout] 21: 0x562c7183a06e - core::ops::function::FnOnce::call_once::ha1c5a133dbc170e7 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 22: 0x562c719608ef - as core::ops::function::FnOnce>::call_once::h1f6ee40732e80908 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 23: 0x562c7197beee - as core::ops::function::FnOnce<()>>::call_once::h85dff111be9c2dc6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 24: 0x562c7197beee - std::panicking::try::do_call::hee6f5a4bef67c840 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 25: 0x562c7197beee - std::panicking::try::h3384d3b948e84dbc [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 26: 0x562c7197beee - std::panic::catch_unwind::h5ae91218e578066d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 27: 0x562c7197beee - test::run_test_in_process::he37a49587889b910 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 28: 0x562c7197beee - test::run_test::run_test_inner::{{closure}}::h4f0d25136ca480c2 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 29: 0x562c71953ea6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h969eceda34247af3 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 30: 0x562c71959235 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h912007997cb04e92 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:475 [INFO] [stdout] 31: 0x562c71959235 - as core::ops::function::FnOnce<()>>::call_once::h8795d8b7bd223988 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 32: 0x562c71959235 - std::panicking::try::do_call::hb29b86f86d4d722e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 33: 0x562c71959235 - std::panicking::try::h4bfefb3eddc0d900 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 34: 0x562c71959235 - std::panic::catch_unwind::h774c24d4b38d5828 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 35: 0x562c71959235 - std::thread::Builder::spawn_unchecked::{{closure}}::ha50a32fa99413dde [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:474 [INFO] [stdout] 36: 0x562c71959235 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dacb8f28d699f86 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 37: 0x562c71c221bf - as core::ops::function::FnOnce>::call_once::h7deaeeba480c6ce2 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 38: 0x562c71c35563 - as core::ops::function::FnOnce>::call_once::h968b1dfb87756523 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 39: 0x562c71c35563 - std::sys::unix::thread::Thread::new::thread_start::h2399addeb6370595 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 40: 0x7f110c5a36db - start_thread [INFO] [stdout] 41: 0x7f110c0b488f - __clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'index out of bounds: the len is 2 but the index is 2', src/uniprot.rs:51:26 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x562c71c2bd14 - backtrace::backtrace::libunwind::trace::h61666fa4b9834a45 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x562c71c2bd14 - backtrace::backtrace::trace_unsynchronized::h01d3725fb5da8653 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x562c71c2bd14 - std::sys_common::backtrace::_print_fmt::h5c7c4751bc296f90 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x562c71c2bd14 - ::fmt::h7729313ad2d729c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x562c71c56c4c - core::fmt::write::hb0049f6c12bdaffc [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x562c719549f5 - std::io::Write::write_fmt::h5d052af13df32ea6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x562c71c261d1 - std::io::impls::>::write_fmt::h8fe8a9bdc421b4b6 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x562c71c2e5f5 - std::sys_common::backtrace::_print::ha087cac92e84a414 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x562c71c2e5f5 - std::sys_common::backtrace::print::h6b013d3bfe6cbcb8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x562c71c2e5f5 - std::panicking::default_hook::{{closure}}::h016d7de02def2736 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x562c71c2e2db - std::panicking::default_hook::h9386f7e484840463 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x562c71c2ec52 - std::panicking::rust_panic_with_hook::h3846eb1b2e5a9312 [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x562c71c2e83b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x562c71c54a11 - core::panicking::panic_fmt::hc5953a7331f9805c [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x562c71c549d2 - core::panicking::panic_bounds_check::hadd21164dc21efa2 [INFO] [stdout] at src/libcore/panicking.rs:69 [INFO] [stdout] 15: 0x562c71bf8912 - >::index::he1dd63cbebc72fce [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/slice/mod.rs:2872 [INFO] [stdout] 16: 0x562c71bf8833 - core::slice:: for [T]>::index::ha76196032469ef2f [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/slice/mod.rs:2732 [INFO] [stdout] 17: 0x562c71bf7275 - as core::ops::index::Index>::index::h58536c0cfec49571 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/vec.rs:1945 [INFO] [stdout] 18: 0x562c718221ef - global_supertrees::uniprot::load_mapping_file::h447feb35b6012ae4 [INFO] [stdout] at src/uniprot.rs:51 [INFO] [stdout] 19: 0x562c71805338 - global_supertrees::tests::tests::test_merge_organisms::h51dc8f289387114b [INFO] [stdout] at src/tests.rs:245 [INFO] [stdout] 20: 0x562c718052da - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::h19c53f99915c3dc2 [INFO] [stdout] at src/tests.rs:244 [INFO] [stdout] 21: 0x562c7183a27e - core::ops::function::FnOnce::call_once::hf5ff77bb4a0085be [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 22: 0x562c719608ef - as core::ops::function::FnOnce>::call_once::h1f6ee40732e80908 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 23: 0x562c7197beee - as core::ops::function::FnOnce<()>>::call_once::h85dff111be9c2dc6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 24: 0x562c7197beee - std::panicking::try::do_call::hee6f5a4bef67c840 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 25: 0x562c7197beee - std::panicking::try::h3384d3b948e84dbc [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 26: 0x562c7197beee - std::panic::catch_unwind::h5ae91218e578066d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 27: 0x562c7197beee - test::run_test_in_process::he37a49587889b910 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 28: 0x562c7197beee - test::run_test::run_test_inner::{{closure}}::h4f0d25136ca480c2 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 29: 0x562c71953ea6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h969eceda34247af3 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 30: 0x562c71959235 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h912007997cb04e92 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:475 [INFO] [stdout] 31: 0x562c71959235 - as core::ops::function::FnOnce<()>>::call_once::h8795d8b7bd223988 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 32: 0x562c71959235 - std::panicking::try::do_call::hb29b86f86d4d722e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 33: 0x562c71959235 - std::panicking::try::h4bfefb3eddc0d900 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 34: 0x562c71959235 - std::panic::catch_unwind::h774c24d4b38d5828 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 35: 0x562c71959235 - std::thread::Builder::spawn_unchecked::{{closure}}::ha50a32fa99413dde [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:474 [INFO] [stdout] 36: 0x562c71959235 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dacb8f28d699f86 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 37: 0x562c71c221bf - as core::ops::function::FnOnce>::call_once::h7deaeeba480c6ce2 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 38: 0x562c71c35563 - as core::ops::function::FnOnce>::call_once::h968b1dfb87756523 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 39: 0x562c71c35563 - std::sys::unix::thread::Thread::new::thread_start::h2399addeb6370595 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 40: 0x7f110c5a36db - start_thread [INFO] [stdout] 41: 0x7f110c0b488f - __clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'index out of bounds: the len is 2 but the index is 2', src/uniprot.rs:51:26 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x562c71c2bd14 - backtrace::backtrace::libunwind::trace::h61666fa4b9834a45 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x562c71c2bd14 - backtrace::backtrace::trace_unsynchronized::h01d3725fb5da8653 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x562c71c2bd14 - std::sys_common::backtrace::_print_fmt::h5c7c4751bc296f90 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x562c71c2bd14 - ::fmt::h7729313ad2d729c7 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x562c71c56c4c - core::fmt::write::hb0049f6c12bdaffc [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x562c719549f5 - std::io::Write::write_fmt::h5d052af13df32ea6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x562c71c261d1 - std::io::impls::>::write_fmt::h8fe8a9bdc421b4b6 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x562c71c2e5f5 - std::sys_common::backtrace::_print::ha087cac92e84a414 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x562c71c2e5f5 - std::sys_common::backtrace::print::h6b013d3bfe6cbcb8 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x562c71c2e5f5 - std::panicking::default_hook::{{closure}}::h016d7de02def2736 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x562c71c2e2db - std::panicking::default_hook::h9386f7e484840463 [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x562c71c2ec52 - std::panicking::rust_panic_with_hook::h3846eb1b2e5a9312 [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x562c71c2e83b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x562c71c54a11 - core::panicking::panic_fmt::hc5953a7331f9805c [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x562c71c549d2 - core::panicking::panic_bounds_check::hadd21164dc21efa2 [INFO] [stdout] at src/libcore/panicking.rs:69 [INFO] [stdout] 15: 0x562c71bf8912 - >::index::he1dd63cbebc72fce [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/slice/mod.rs:2872 [INFO] [stdout] 16: 0x562c71bf8833 - core::slice:: for [T]>::index::ha76196032469ef2f [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/slice/mod.rs:2732 [INFO] [stdout] 17: 0x562c71bf7275 - as core::ops::index::Index>::index::h58536c0cfec49571 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/vec.rs:1945 [INFO] [stdout] 18: 0x562c718221ef - global_supertrees::uniprot::load_mapping_file::h447feb35b6012ae4 [INFO] [stdout] at src/uniprot.rs:51 [INFO] [stdout] 19: 0x562c718050a5 - global_supertrees::tests::tests::test_batch_id_tax_mapping::hced3035d4a9a40ea [INFO] [stdout] at src/tests.rs:239 [INFO] [stdout] 20: 0x562c71804f5a - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::hf9eedf9ba9f23a07 [INFO] [stdout] at src/tests.rs:236 [INFO] [stdout] 21: 0x562c71839d6e - core::ops::function::FnOnce::call_once::h4fada1bda3fec4c1 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 22: 0x562c719608ef - as core::ops::function::FnOnce>::call_once::h1f6ee40732e80908 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 23: 0x562c7197beee - as core::ops::function::FnOnce<()>>::call_once::h85dff111be9c2dc6 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 24: 0x562c7197beee - std::panicking::try::do_call::hee6f5a4bef67c840 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 25: 0x562c7197beee - std::panicking::try::h3384d3b948e84dbc [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 26: 0x562c7197beee - std::panic::catch_unwind::h5ae91218e578066d [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 27: 0x562c7197beee - test::run_test_in_process::he37a49587889b910 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 28: 0x562c7197beee - test::run_test::run_test_inner::{{closure}}::h4f0d25136ca480c2 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 29: 0x562c71953ea6 - std::sys_common::backtrace::__rust_begin_short_backtrace::h969eceda34247af3 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 30: 0x562c71959235 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h912007997cb04e92 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:475 [INFO] [stdout] 31: 0x562c71959235 - as core::ops::function::FnOnce<()>>::call_once::h8795d8b7bd223988 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:318 [INFO] [stdout] 32: 0x562c71959235 - std::panicking::try::do_call::hb29b86f86d4d722e [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:331 [INFO] [stdout] 33: 0x562c71959235 - std::panicking::try::h4bfefb3eddc0d900 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panicking.rs:274 [INFO] [stdout] 34: 0x562c71959235 - std::panic::catch_unwind::h774c24d4b38d5828 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/panic.rs:394 [INFO] [stdout] 35: 0x562c71959235 - std::thread::Builder::spawn_unchecked::{{closure}}::ha50a32fa99413dde [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libstd/thread/mod.rs:474 [INFO] [stdout] 36: 0x562c71959235 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h9dacb8f28d699f86 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/libcore/ops/function.rs:232 [INFO] [stdout] 37: 0x562c71c221bf - as core::ops::function::FnOnce>::call_once::h7deaeeba480c6ce2 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 38: 0x562c71c35563 - as core::ops::function::FnOnce>::call_once::h968b1dfb87756523 [INFO] [stdout] at /rustc/41997647ba6a77908f6ef64401414feb00bccf16/src/liballoc/boxed.rs:1008 [INFO] [stdout] 39: 0x562c71c35563 - std::sys::unix::thread::Thread::new::thread_start::h2399addeb6370595 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 40: 0x7f110c5a36db - start_thread [INFO] [stdout] 41: 0x7f110c0b488f - __clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] tests::tests::test_merge_trees [INFO] [stdout] [INFO] [stdout] test result: FAILED. 15 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `"docker" "inspect" "3e52ffd9b0a478e34860cb609b570543cb50a325cafead5d6fe67006b026c3e9"` [INFO] running `"docker" "rm" "-f" "3e52ffd9b0a478e34860cb609b570543cb50a325cafead5d6fe67006b026c3e9"` [INFO] [stdout] 3e52ffd9b0a478e34860cb609b570543cb50a325cafead5d6fe67006b026c3e9