[INFO] crate rnafamprob 0.1.0 is already in cache [INFO] testing rnafamprob-0.1.0 against master#28742a1146f10a4f09369baad027a464acb7a766 for pr-71274 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain 28742a1146f10a4f09369baad027a464acb7a766 [INFO] running `"/workspace/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6f1bc4ea161ca20a730a554edae10b34c2de18fd02a95fd6ab221e4563edf010 [INFO] running `"docker" "start" "-a" "6f1bc4ea161ca20a730a554edae10b34c2de18fd02a95fd6ab221e4563edf010"` [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ucd-util v0.1.5 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling lazy_static v0.1.16 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling bio-seq-algos v0.1.12 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling rna-ss-params v0.1.13 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling regex-automata v0.1.8 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling csv-core v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling bstr v0.2.8 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.1.1 [INFO] [stderr] Compiling bio v0.20.3 [INFO] [stderr] Compiling rna-algos v0.1.10 [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 27s [INFO] running `"docker" "inspect" "6f1bc4ea161ca20a730a554edae10b34c2de18fd02a95fd6ab221e4563edf010"` [INFO] running `"docker" "rm" "-f" "6f1bc4ea161ca20a730a554edae10b34c2de18fd02a95fd6ab221e4563edf010"` [INFO] [stdout] 6f1bc4ea161ca20a730a554edae10b34c2de18fd02a95fd6ab221e4563edf010 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "test" "--frozen" "--no-run"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2f51c2c0d812b2860915dd4193873df68ccdc55621ab0ff151390361f4f62f77 [INFO] running `"docker" "start" "-a" "2f51c2c0d812b2860915dd4193873df68ccdc55621ab0ff151390361f4f62f77"` [INFO] [stderr] Compiling rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.19s [INFO] running `"docker" "inspect" "2f51c2c0d812b2860915dd4193873df68ccdc55621ab0ff151390361f4f62f77"` [INFO] running `"docker" "rm" "-f" "2f51c2c0d812b2860915dd4193873df68ccdc55621ab0ff151390361f4f62f77"` [INFO] [stdout] 2f51c2c0d812b2860915dd4193873df68ccdc55621ab0ff151390361f4f62f77 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7ccb01ef2646fdd17227623ef65476559a856ab561220b95da9f9a1a883d8047 [INFO] running `"docker" "start" "-a" "7ccb01ef2646fdd17227623ef65476559a856ab561220b95da9f9a1a883d8047"` [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/lib.rs:1279:152 [INFO] [stderr] | [INFO] [stderr] 1279 | let ep_of_term_4_log_pf = log_sta_ppf_mat_sets.log_ppf_mats_on_sas.log_ppf_mat_4_gaps_2[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/utils.rs:26:1 [INFO] [stderr] | [INFO] [stderr] 26 | / lazy_static! { [INFO] [stderr] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stderr] 28 | | [ [INFO] [stderr] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stderr] ... | [INFO] [stderr] 44 | | }; [INFO] [stderr] 45 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: 5 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.23s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rnafamprob-6d05916fe995a1a7 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/rnafamprob-3fb76401e5a25920 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/tests-4e6dcfa0e5ca45e2 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_rnafam_program ... FAILED [INFO] [stderr] error: test failed, to rerun pass '--test tests' [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_rnafam_program stdout ---- [INFO] [stdout] thread 'test_rnafam_program' panicked at 'Failed to run the RNAfamProb program.: Os { code: 2, kind: NotFound, message: "No such file or directory" }', tests/tests.rs:19:3 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x555a413c46f4 - backtrace::backtrace::libunwind::trace::hbb4ce8c04526962e [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x555a413c46f4 - backtrace::backtrace::trace_unsynchronized::h79251c088e7be038 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x555a413c46f4 - std::sys_common::backtrace::_print_fmt::h6b0ea30a9223acae [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x555a413c46f4 - ::fmt::h4d51ef07ce58e54b [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x555a413ed31c - core::fmt::write::he16b9c1345d8565e [INFO] [stdout] at src/libcore/fmt/mod.rs:1069 [INFO] [stdout] 5: 0x555a41377045 - std::io::Write::write_fmt::hc31efe493f037457 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/io/mod.rs:1504 [INFO] [stdout] 6: 0x555a413bed11 - std::io::impls::>::write_fmt::hfcb1ff6c5b834381 [INFO] [stdout] at src/libstd/io/impls.rs:156 [INFO] [stdout] 7: 0x555a413c6f45 - std::sys_common::backtrace::_print::h9288fa7d9f6629cb [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x555a413c6f45 - std::sys_common::backtrace::print::h82e606e62781d8af [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x555a413c6f45 - std::panicking::default_hook::{{closure}}::h1fe350ecbf7604e4 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x555a413c6c2b - std::panicking::default_hook::h1b8b42953fdc841d [INFO] [stdout] at src/libstd/panicking.rs:215 [INFO] [stdout] 11: 0x555a413c75a2 - std::panicking::rust_panic_with_hook::he73826f4bb75a21e [INFO] [stdout] at src/libstd/panicking.rs:511 [INFO] [stdout] 12: 0x555a413c718b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:419 [INFO] [stdout] 13: 0x555a413ebd41 - core::panicking::panic_fmt::hc8f9a0b2af5fb585 [INFO] [stdout] at src/libcore/panicking.rs:111 [INFO] [stdout] 14: 0x555a413ebb63 - core::option::expect_none_failed::ha34d57526cca3063 [INFO] [stdout] at src/libcore/option.rs:1268 [INFO] [stdout] 15: 0x555a41372ad5 - core::result::Result::expect::hb3984cb886241860 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x555a41375303 - tests::run_command::h91cd690ca142f795 [INFO] [stdout] at tests/tests.rs:19 [INFO] [stdout] 17: 0x555a41375436 - tests::test_rnafam_program::h6ef34390583dab95 [INFO] [stdout] at tests/tests.rs:12 [INFO] [stdout] 18: 0x555a4137533a - tests::test_rnafam_program::{{closure}}::h8141d108574b4457 [INFO] [stdout] at tests/tests.rs:8 [INFO] [stdout] 19: 0x555a41371f7e - core::ops::function::FnOnce::call_once::h84eba35c06a85e19 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libcore/ops/function.rs:232 [INFO] [stdout] 20: 0x555a41382f3f - as core::ops::function::FnOnce>::call_once::he1ba1da20629a2d8 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/liballoc/boxed.rs:1008 [INFO] [stdout] 21: 0x555a4139e53e - as core::ops::function::FnOnce<()>>::call_once::hf94927858761de4a [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x555a4139e53e - std::panicking::try::do_call::h1585003392664d93 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panicking.rs:331 [INFO] [stdout] 23: 0x555a4139e53e - std::panicking::try::h43d950f958a74468 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panicking.rs:274 [INFO] [stdout] 24: 0x555a4139e53e - std::panic::catch_unwind::hb5284de2977ddeea [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x555a4139e53e - test::run_test_in_process::had39bb305b26a3ae [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x555a4139e53e - test::run_test::run_test_inner::{{closure}}::h12b1756b854ada1a [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x555a413764f6 - std::sys_common::backtrace::__rust_begin_short_backtrace::hec04b80bece92bf9 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x555a4137b815 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::heca431434c1ac418 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x555a4137b815 - as core::ops::function::FnOnce<()>>::call_once::he2457d582c032747 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x555a4137b815 - std::panicking::try::do_call::hbcd49dc3823e8b28 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panicking.rs:331 [INFO] [stdout] 31: 0x555a4137b815 - std::panicking::try::h1ba95c07dd8d422b [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panicking.rs:274 [INFO] [stdout] 32: 0x555a4137b815 - std::panic::catch_unwind::h95854794ba9eee4c [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x555a4137b815 - std::thread::Builder::spawn_unchecked::{{closure}}::h4e297b8574092d6e [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x555a4137b815 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1b855aad7f5ac67e [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/libcore/ops/function.rs:232 [INFO] [stdout] 35: 0x555a413baf1f - as core::ops::function::FnOnce>::call_once::h48069b269ca48108 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/liballoc/boxed.rs:1008 [INFO] [stdout] 36: 0x555a413cde13 - as core::ops::function::FnOnce>::call_once::heff660b32cd3afd8 [INFO] [stdout] at /rustc/28742a1146f10a4f09369baad027a464acb7a766/src/liballoc/boxed.rs:1008 [INFO] [stdout] 37: 0x555a413cde13 - std::sys::unix::thread::Thread::new::thread_start::ha538939ed1e2e958 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7fd7484d76db - start_thread [INFO] [stdout] 39: 0x7fd747fe888f - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_rnafam_program [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "7ccb01ef2646fdd17227623ef65476559a856ab561220b95da9f9a1a883d8047"` [INFO] running `"docker" "rm" "-f" "7ccb01ef2646fdd17227623ef65476559a856ab561220b95da9f9a1a883d8047"` [INFO] [stdout] 7ccb01ef2646fdd17227623ef65476559a856ab561220b95da9f9a1a883d8047