[INFO] crate biofile 0.10.1 is already in cache [INFO] testing biofile-0.10.1 against master#28742a1146f10a4f09369baad027a464acb7a766 for pr-71274 [INFO] extracting crate biofile 0.10.1 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate biofile 0.10.1 on toolchain 28742a1146f10a4f09369baad027a464acb7a766 [INFO] running `"/workspace/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate biofile 0.10.1 [INFO] finished tweaking crates.io crate biofile 0.10.1 [INFO] tweaked toml for crates.io crate biofile 0.10.1 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "build" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d4f95798f0ebdd70861512c36b26e5be3bc7240df39af3ecc9b7ba2c7585e1fa [INFO] running `"docker" "start" "-a" "d4f95798f0ebdd70861512c36b26e5be3bc7240df39af3ecc9b7ba2c7585e1fa"` [INFO] [stderr] Compiling libc v0.2.69 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rayon v1.3.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling num v0.2.1 [INFO] [stderr] Compiling analytic v0.4.1 [INFO] [stderr] Compiling biofile v0.10.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 25.20s [INFO] running `"docker" "inspect" "d4f95798f0ebdd70861512c36b26e5be3bc7240df39af3ecc9b7ba2c7585e1fa"` [INFO] running `"docker" "rm" "-f" "d4f95798f0ebdd70861512c36b26e5be3bc7240df39af3ecc9b7ba2c7585e1fa"` [INFO] [stdout] d4f95798f0ebdd70861512c36b26e5be3bc7240df39af3ecc9b7ba2c7585e1fa [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "test" "--frozen" "--no-run"` [INFO] [stdout] 4dafc241a744ca693279e8b17ec8fc8d9739ef534b9ecdf58131c09070dc4f28 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `"docker" "start" "-a" "4dafc241a744ca693279e8b17ec8fc8d9739ef534b9ecdf58131c09070dc4f28"` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling remove_dir_all v0.5.2 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling ndarray-rand v0.9.0 [INFO] [stderr] Compiling biofile v0.10.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/bedgraph.rs:133:11 [INFO] [stderr] | [INFO] [stderr] 133 | ].into_iter().map(|(a, b)| (*a, *b)).collect(); [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/bedgraph.rs:136:11 [INFO] [stderr] | [INFO] [stderr] 136 | ].into_iter().map(|(a, b)| (*a, *b)).collect(); [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 13.22s [INFO] running `"docker" "inspect" "4dafc241a744ca693279e8b17ec8fc8d9739ef534b9ecdf58131c09070dc4f28"` [INFO] running `"docker" "rm" "-f" "4dafc241a744ca693279e8b17ec8fc8d9739ef534b9ecdf58131c09070dc4f28"` [INFO] [stdout] 4dafc241a744ca693279e8b17ec8fc8d9739ef534b9ecdf58131c09070dc4f28 [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+28742a1146f10a4f09369baad027a464acb7a766" "test" "--frozen"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6088442865d2affaa0c3e091a5a2bf3aa3a4c588efb9958e30993af7b4fc3dc5 [INFO] running `"docker" "start" "-a" "6088442865d2affaa0c3e091a5a2bf3aa3a4c588efb9958e30993af7b4fc3dc5"` [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/bedgraph.rs:133:11 [INFO] [stderr] | [INFO] [stderr] 133 | ].into_iter().map(|(a, b)| (*a, *b)).collect(); [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(array_into_iter)]` on by default [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stderr] --> src/bedgraph.rs:136:11 [INFO] [stderr] | [INFO] [stderr] 136 | ].into_iter().map(|(a, b)| (*a, *b)).collect(); [INFO] [stderr] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stderr] | [INFO] [stderr] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stderr] = note: for more information, see issue #66145 [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.52s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/biofile-89bdeb0d7c212751 [INFO] [stdout] [INFO] [stdout] running 14 tests [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps ... ok [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps_from_geno ... ok [INFO] [stdout] test plink_bim::tests::test_get_fileline_partitions ... ok [INFO] [stdout] test plink_bim::tests::test_get_all_chroms ... ok [INFO] [stdout] test plink_bim::tests::test_fileline_partitions_iter ... ok [INFO] [stdout] test bedgraph::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test plink_bed::tests::test_create_dominance_geno_bed ... ok [INFO] [stdout] test plink_bed::tests::test_create_bed ... ok [INFO] [stdout] test plink_bim::tests::test_get_chrom_to_positions ... ok [INFO] [stdout] test plink_bed::tests::test_convert_to_dominance_representation ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_peaks ... ok [INFO] [stdout] test plink_bed::tests::test_multiple_bfiles ... ok [INFO] [stderr] Doc-tests biofile [INFO] [stdout] test plink_bed::tests::test_chunk_iter ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "6088442865d2affaa0c3e091a5a2bf3aa3a4c588efb9958e30993af7b4fc3dc5"` [INFO] running `"docker" "rm" "-f" "6088442865d2affaa0c3e091a5a2bf3aa3a4c588efb9958e30993af7b4fc3dc5"` [INFO] [stdout] 6088442865d2affaa0c3e091a5a2bf3aa3a4c588efb9958e30993af7b4fc3dc5