[INFO] crate flann-sys 0.1.0 is already in cache [INFO] checking flann-sys-0.1.0 against try#8a5e87609850cdd8679aada01eb0f3062f254ca8 for pr-71140 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 8a5e87609850cdd8679aada01eb0f3062f254ca8 [INFO] running `"/workspace/cargo-home/bin/cargo" "+8a5e87609850cdd8679aada01eb0f3062f254ca8" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+8a5e87609850cdd8679aada01eb0f3062f254ca8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+8a5e87609850cdd8679aada01eb0f3062f254ca8" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+8a5e87609850cdd8679aada01eb0f3062f254ca8" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1be97f5461781d6cf72a293a69e661cab83caea461a3d6a9c7f56a90ddd04f3b [INFO] running `"docker" "start" "-a" "1be97f5461781d6cf72a293a69e661cab83caea461a3d6a9c7f56a90ddd04f3b"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-af52cedb2a81a39e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-bf6525de4513630b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 7.5.0 [INFO] [stderr] -- The CXX compiler identification is GNU 7.5.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.17") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp [INFO] [stderr] -- Found OpenMP: TRUE [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-bf6525de4513630b/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-bf6525de4513630b/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if): [INFO] [stderr] if given arguments: [INFO] [stderr] [INFO] [stderr] "TRUE" [INFO] [stderr] [INFO] [stderr] An argument named "TRUE" appears in a conditional statement. Policy [INFO] [stderr] CMP0012 is not set: if() recognizes numbers and boolean constants. Run [INFO] [stderr] "cmake --help-policy CMP0012" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) [INFO] [stderr] CMakeLists.txt:122 (find_package) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55929a692194 - backtrace::backtrace::libunwind::trace::h6e17b062984af3e8 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55929a692194 - backtrace::backtrace::trace_unsynchronized::h8e8466cf6548b0a1 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55929a692194 - std::sys_common::backtrace::_print_fmt::h8b68822dc1659286 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55929a692194 - ::fmt::h88b6471123f77ef0 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55929a6be05c - core::fmt::write::h94d2034151aba49c [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x55929a68e353 - std::io::Write::write_fmt::h6fc26f6b5b7be1bb [INFO] [stderr] at src/libstd/io/mod.rs:1504 [INFO] [stderr] 6: 0x55929a694fd5 - std::sys_common::backtrace::_print::hba484280b1d7576c [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55929a694fd5 - std::sys_common::backtrace::print::h57e28f7caf9bd6c7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55929a694fd5 - std::panicking::default_hook::{{closure}}::h32a487ca417fdc4e [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55929a694d12 - std::panicking::default_hook::hc39090d3c371f581 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55929a695632 - std::panicking::rust_panic_with_hook::h7e4d6ca2da996f73 [INFO] [stderr] at src/libstd/panicking.rs:511 [INFO] [stderr] 11: 0x55929a69521b - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:419 [INFO] [stderr] 12: 0x55929a69518b - std::panicking::begin_panic_fmt::h40fe9931c484bb07 [INFO] [stderr] at src/libstd/panicking.rs:373 [INFO] [stderr] 13: 0x55929a10c817 - cmake::fail::h8c14ae0a937dc444 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 14: 0x55929a10c15c - cmake::run::h5d6d08458eb3a354 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 15: 0x55929a107b45 - cmake::Config::build::h5af1f2835dd25461 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:674 [INFO] [stderr] 16: 0x55929a102a42 - build_script_build::main::h43dc7a6c0cd7d5b0 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30 [INFO] [stderr] 17: 0x55929a10316b - std::rt::lang_start::{{closure}}::h2bb8153a9cf7b1af [INFO] [stderr] at /rustc/8a5e87609850cdd8679aada01eb0f3062f254ca8/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x55929a695a78 - std::rt::lang_start_internal::{{closure}}::h44f983614a45c0ee [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x55929a695a78 - std::panicking::try::do_call::hc8977591a8cf0af7 [INFO] [stderr] at src/libstd/panicking.rs:331 [INFO] [stderr] 20: 0x55929a695a78 - std::panicking::try::haa2790657feac5c7 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 21: 0x55929a695a78 - std::panic::catch_unwind::hb657324443ad5ddd [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x55929a695a78 - std::rt::lang_start_internal::h1fc8fe15552816a9 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x55929a103147 - std::rt::lang_start::h6eb0cd1027b2c83b [INFO] [stderr] at /rustc/8a5e87609850cdd8679aada01eb0f3062f254ca8/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x55929a102e4a - main [INFO] [stderr] 25: 0x7f7b01913b97 - __libc_start_main [INFO] [stderr] 26: 0x55929a1026da - _start [INFO] [stderr] 27: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "1be97f5461781d6cf72a293a69e661cab83caea461a3d6a9c7f56a90ddd04f3b"` [INFO] running `"docker" "rm" "-f" "1be97f5461781d6cf72a293a69e661cab83caea461a3d6a9c7f56a90ddd04f3b"` [INFO] [stdout] 1be97f5461781d6cf72a293a69e661cab83caea461a3d6a9c7f56a90ddd04f3b