[INFO] updating cached repository https://github.com/Mimerme/Mimerme [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d [INFO] checking Mimerme/Mimerme against master#ba72b15666b2491415aec703a02c2364fe5e2790 for pr-71140 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-6/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] [stderr] Checking out files: 67% (21/31) Checking out files: 70% (22/31) Checking out files: 74% (23/31) Checking out files: 77% (24/31) Checking out files: 80% (25/31) Checking out files: 83% (26/31) Checking out files: 87% (27/31) Checking out files: 90% (28/31) Checking out files: 93% (29/31) Checking out files: 96% (30/31) Checking out files: 100% (31/31) Checking out files: 100% (31/31), done. [INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain ba72b15666b2491415aec703a02c2364fe5e2790 [INFO] running `"/workspace/cargo-home/bin/cargo" "+ba72b15666b2491415aec703a02c2364fe5e2790" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/Mimerme/Mimerme [INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme [INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+ba72b15666b2491415aec703a02c2364fe5e2790" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ba72b15666b2491415aec703a02c2364fe5e2790" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9c31dcf8919ec39f3c76fb64e70ca6bc7b6bf0ee5689bc6945b84b9b3d341256 [INFO] running `"docker" "start" "-a" "9c31dcf8919ec39f3c76fb64e70ca6bc7b6bf0ee5689bc6945b84b9b3d341256"` [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking libz-sys v1.0.25 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.105 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling snafu-derive v0.6.3 [INFO] [stderr] Checking snafu v0.6.0 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Checking serde v1.0.105 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] error: failed to run custom build command for `hts-sys v1.10.2` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-sys-fae00b2e80b875fa/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#ifndef __APPLE__' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#endif' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o header.o header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION_TEXT "1.10.2"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o region.o region.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I. -c -o hfile_libcurl.o hfile_libcurl.c [INFO] [stderr] Makefile:133: recipe for target 'hfile_libcurl.o' failed [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hfile_libcurl.c:47:10: fatal error: curl/curl.h: No such file or directory [INFO] [stderr] #include [INFO] [stderr] ^~~~~~~~~~~~~ [INFO] [stderr] compilation terminated. [INFO] [stderr] make: *** [hfile_libcurl.o] Error 1 [INFO] [stderr] thread 'main' panicked at 'failed to build htslib', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86:9 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55667cd22aa4 - backtrace::backtrace::libunwind::trace::ha1e5a41b7d3ba0cf [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55667cd22aa4 - backtrace::backtrace::trace_unsynchronized::hf18b8c2f3ff8383d [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55667cd22aa4 - std::sys_common::backtrace::_print_fmt::hedecd22228c490e0 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55667cd22aa4 - ::fmt::h340395315789722a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55667cd4f84c - core::fmt::write::h0facfeb5ca58bc9e [INFO] [stderr] at src/libcore/fmt/mod.rs:1069 [INFO] [stderr] 5: 0x55667cd1e653 - std::io::Write::write_fmt::h497f72bb257eb6ad [INFO] [stderr] at src/libstd/io/mod.rs:1504 [INFO] [stderr] 6: 0x55667cd25b45 - std::sys_common::backtrace::_print::h6eaeb972ca7f43b9 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55667cd25b45 - std::sys_common::backtrace::print::h263d3fc63b334d91 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55667cd25b45 - std::panicking::default_hook::{{closure}}::h64185686d42f14f7 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55667cd25882 - std::panicking::default_hook::h8d87bde850f1425e [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55667cd261a2 - std::panicking::rust_panic_with_hook::h066ce8fe1fd73277 [INFO] [stderr] at src/libstd/panicking.rs:511 [INFO] [stderr] 11: 0x55667cc9b411 - std::panicking::begin_panic::h43b9314c91f3e25b [INFO] [stderr] at /rustc/ba72b15666b2491415aec703a02c2364fe5e2790/src/libstd/panicking.rs:438 [INFO] [stderr] 12: 0x55667c6d879c - build_script_build::main::hc1d1b26f20568b9a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hts-sys-1.10.2/build.rs:86 [INFO] [stderr] 13: 0x55667c6daf0b - std::rt::lang_start::{{closure}}::h896e77ba50aac242 [INFO] [stderr] at /rustc/ba72b15666b2491415aec703a02c2364fe5e2790/src/libstd/rt.rs:67 [INFO] [stderr] 14: 0x55667cd266b8 - std::rt::lang_start_internal::{{closure}}::hc6afa970c742b02f [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 15: 0x55667cd266b8 - std::panicking::try::do_call::h1c002a9a857ea77b [INFO] [stderr] at src/libstd/panicking.rs:331 [INFO] [stderr] 16: 0x55667cd266b8 - std::panicking::try::hccaa00db5e9f336f [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 17: 0x55667cd266b8 - std::panic::catch_unwind::h3fae1eafc1fa8e97 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 18: 0x55667cd266b8 - std::rt::lang_start_internal::hfc8f39fad1a9db56 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 19: 0x55667c6daee7 - std::rt::lang_start::h1d07af2fc360437b [INFO] [stderr] at /rustc/ba72b15666b2491415aec703a02c2364fe5e2790/src/libstd/rt.rs:67 [INFO] [stderr] 20: 0x55667c6d9a6a - main [INFO] [stderr] 21: 0x7f8cf16a6b97 - __libc_start_main [INFO] [stderr] 22: 0x55667c6d742a - _start [INFO] [stderr] 23: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "9c31dcf8919ec39f3c76fb64e70ca6bc7b6bf0ee5689bc6945b84b9b3d341256"` [INFO] running `"docker" "rm" "-f" "9c31dcf8919ec39f3c76fb64e70ca6bc7b6bf0ee5689bc6945b84b9b3d341256"` [INFO] [stdout] 9c31dcf8919ec39f3c76fb64e70ca6bc7b6bf0ee5689bc6945b84b9b3d341256