[INFO] updating cached repository https://github.com/natir/br
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] f6570cee2dc9eb8d8321c8b71e7c150b1ea64783
[INFO] checking natir/br against master#209b2be09fcaff937480d1fbbe8b31646e361c7a for pr-70917
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fbr" "/workspace/builds/worker-8/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/natir/br on toolchain 209b2be09fcaff937480d1fbbe8b31646e361c7a
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/natir/br
[INFO] finished tweaking git repo https://github.com/natir/br
[INFO] tweaked toml for git repo https://github.com/natir/br written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/natir/br already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] b84a8acb342ce20faf1a6724c346d6bd1982309207ffeddf00018fa7b181916e
[INFO] running `"docker" "start" "-a" "b84a8acb342ce20faf1a6724c346d6bd1982309207ffeddf00018fa7b181916e"`
[INFO] [stderr]    Compiling bio v0.29.0
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking memchr v2.2.1
[INFO] [stderr]     Checking ndarray v0.13.0
[INFO] [stderr]    Compiling serde_derive v1.0.103
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]     Checking aho-corasick v0.7.6
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking regex v1.3.1
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]     Checking serde v1.0.103
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]     Checking cocktail v0.1.0 (https://github.com/natir/cocktail.git?tag=0.2-beta1#eccc3f5b)
[INFO] [stderr]     Checking br v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:177:18
[INFO] [stderr]     |
[INFO] [stderr] 177 |         data.set(pcon::convert::hash(b"ACTGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:178:18
[INFO] [stderr]     |
[INFO] [stderr] 178 |         data.set(pcon::convert::hash(b"CTGAC", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:179:18
[INFO] [stderr]     |
[INFO] [stderr] 179 |         data.set(pcon::convert::hash(b"TGACG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:180:18
[INFO] [stderr]     |
[INFO] [stderr] 180 |         data.set(pcon::convert::hash(b"GACGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:192:18
[INFO] [stderr]     |
[INFO] [stderr] 192 |         data.set(pcon::convert::hash(b"ACTGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:193:18
[INFO] [stderr]     |
[INFO] [stderr] 193 |         data.set(pcon::convert::hash(b"CTGAC", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:194:18
[INFO] [stderr]     |
[INFO] [stderr] 194 |         data.set(pcon::convert::hash(b"CTGAG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:195:18
[INFO] [stderr]     |
[INFO] [stderr] 195 |         data.set(pcon::convert::hash(b"TGACG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:196:18
[INFO] [stderr]     |
[INFO] [stderr] 196 |         data.set(pcon::convert::hash(b"GACGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:208:18
[INFO] [stderr]     |
[INFO] [stderr] 208 |         data.set(pcon::convert::hash(b"ACTGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:209:18
[INFO] [stderr]     |
[INFO] [stderr] 209 |         data.set(pcon::convert::hash(b"CTGAC", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:210:18
[INFO] [stderr]     |
[INFO] [stderr] 210 |         data.set(pcon::convert::hash(b"TGACG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:211:18
[INFO] [stderr]     |
[INFO] [stderr] 211 |         data.set(pcon::convert::hash(b"GACGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:223:18
[INFO] [stderr]     |
[INFO] [stderr] 223 |         data.set(pcon::convert::hash(b"ACTGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:224:18
[INFO] [stderr]     |
[INFO] [stderr] 224 |         data.set(pcon::convert::hash(b"CTGAC", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:225:18
[INFO] [stderr]     |
[INFO] [stderr] 225 |         data.set(pcon::convert::hash(b"CTGAG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:226:18
[INFO] [stderr]     |
[INFO] [stderr] 226 |         data.set(pcon::convert::hash(b"TGACG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:227:18
[INFO] [stderr]     |
[INFO] [stderr] 227 |         data.set(pcon::convert::hash(b"GACGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:239:18
[INFO] [stderr]     |
[INFO] [stderr] 239 |         data.set(pcon::convert::hash(b"ACTGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:240:18
[INFO] [stderr]     |
[INFO] [stderr] 240 |         data.set(pcon::convert::hash(b"CTGAC", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:241:18
[INFO] [stderr]     |
[INFO] [stderr] 241 |         data.set(pcon::convert::hash(b"TGACG", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `pcon`
[INFO] [stderr]    --> src/correct.rs:242:18
[INFO] [stderr]     |
[INFO] [stderr] 242 |         data.set(pcon::convert::hash(b"GACGA", 5), true);
[INFO] [stderr]     |                  ^^^^ use of undeclared type or module `pcon`
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `kmer` is never read
[INFO] [stderr]   --> src/correct.rs:54:17
[INFO] [stderr]    |
[INFO] [stderr] 54 |                 kmer = corrected_kmer;
[INFO] [stderr]    |                 ^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_assignments)]` on by default
[INFO] [stderr]    = help: maybe it is overwritten before being read?
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `score`
[INFO] [stderr]    --> src/correct.rs:114:10
[INFO] [stderr]     |
[INFO] [stderr] 114 |     let (score, alt_nuc, error_type, alt_kmer) = &scenario[0];
[INFO] [stderr]     |          ^^^^^ help: if this is intentional, prefix it with an underscore: `_score`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:102:17
[INFO] [stderr]     |
[INFO] [stderr] 102 |             let mut right_left = correct::correct_read(seq, k, solidity, &data);
[INFO] [stderr]     |                 ----^^^^^^^^^^
[INFO] [stderr]     |                 |
[INFO] [stderr]     |                 help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variant is never constructed: `None`
[INFO] [stderr]   --> src/correct.rs:26:5
[INFO] [stderr]    |
[INFO] [stderr] 26 |     None = 0,
[INFO] [stderr]    |     ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to 22 previous errors
[INFO] [stderr] 
[INFO] [stderr] For more information about this error, try `rustc --explain E0433`.
[INFO] [stderr] error: could not compile `br`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "b84a8acb342ce20faf1a6724c346d6bd1982309207ffeddf00018fa7b181916e"`
[INFO] running `"docker" "rm" "-f" "b84a8acb342ce20faf1a6724c346d6bd1982309207ffeddf00018fa7b181916e"`
[INFO] [stdout] b84a8acb342ce20faf1a6724c346d6bd1982309207ffeddf00018fa7b181916e
