[INFO] updating cached repository https://github.com/berquist/rchem
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] e74d38efd0881071e08d836c9ddc615002d19f0e
[INFO] checking berquist/rchem against master#209b2be09fcaff937480d1fbbe8b31646e361c7a for pr-70917
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem" "/workspace/builds/worker-11/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/berquist/rchem on toolchain 209b2be09fcaff937480d1fbbe8b31646e361c7a
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/berquist/rchem
[INFO] finished tweaking git repo https://github.com/berquist/rchem
[INFO] tweaked toml for git repo https://github.com/berquist/rchem written to /workspace/builds/worker-11/source/Cargo.toml
[INFO] crate git repo https://github.com/berquist/rchem already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 31e83314ad6af691a80679a72737fe3b8f126e289692f41277a0f6b81db7cb83
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "31e83314ad6af691a80679a72737fe3b8f126e289692f41277a0f6b81db7cb83"`
[INFO] [stderr]    Compiling syn v0.15.42
[INFO] [stderr]    Compiling arrayvec v0.4.11
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]     Checking blas-src v0.2.1
[INFO] [stderr]    Compiling cpython v0.2.1
[INFO] [stderr]    Compiling cmake v0.1.40
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]    Compiling GSL v1.1.0
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]     Checking rand_xoshiro v0.1.0
[INFO] [stderr]     Checking criterion-plot v0.3.1
[INFO] [stderr]     Checking rand v0.5.6
[INFO] [stderr]     Checking cblas-sys v0.1.4
[INFO] [stderr]     Checking lapacke-sys v0.1.4
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]    Compiling netlib-src v0.7.4
[INFO] [stderr]    Compiling chemfiles-sys v0.9.1
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.4
[INFO] [stderr]     Checking crossbeam-epoch v0.7.2
[INFO] [stderr]    Compiling regex v1.2.0
[INFO] [stderr]     Checking crossbeam-deque v0.6.3
[INFO] [stderr]     Checking rayon-core v1.5.0
[INFO] [stderr]     Checking rayon v1.1.0
[INFO] [stderr]     Checking boys v0.1.0 (https://github.com/berquist/boys#23f2dc9a)
[INFO] [stderr]    Compiling serde_derive v1.0.98
[INFO] [stderr]    Compiling python3-sys v0.2.1
[INFO] [stderr]     Checking serde v1.0.98
[INFO] [stderr]     Checking serde_json v1.0.40
[INFO] [stderr]     Checking bstr v0.2.6
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]     Checking cauchy v0.2.2
[INFO] [stderr]     Checking lapacke v0.2.0
[INFO] [stderr]     Checking tinytemplate v1.0.2
[INFO] [stderr]     Checking criterion v0.2.11
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-ac0910b881021936/build-script-build` (exit code: 101)
[INFO] [stderr] --- stdout
[INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.1/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-e3f26040a205cae5/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr] -- The C compiler identification is GNU 7.5.0
[INFO] [stderr] -- The CXX compiler identification is GNU 7.5.0
[INFO] [stderr] -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr] -- Detecting C compiler ABI info
[INFO] [stderr] -- Detecting C compiler ABI info - done
[INFO] [stderr] -- Detecting C compile features
[INFO] [stderr] -- Detecting C compile features - done
[INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr] -- Detecting CXX compiler ABI info
[INFO] [stderr] -- Detecting CXX compiler ABI info - done
[INFO] [stderr] -- Detecting CXX compile features
[INFO] [stderr] -- Detecting CXX compile features - done
[INFO] [stderr] -- Unpacking fmt sources
[INFO] [stderr] -- Unpacking toml11 sources
[INFO] [stderr] -- Unpacking netcdf sources
[INFO] [stderr] -- Unpacking tng sources
[INFO] [stderr] -- Check if the system is big endian
[INFO] [stderr] -- Searching 16 bit integer
[INFO] [stderr] -- Using unsigned short
[INFO] [stderr] -- Check if the system is big endian - little endian
[INFO] [stderr] -- Unpacking molfiles sources
[INFO] [stderr] -- Unpacking mmtf-cpp sources
[INFO] [stderr] -- Unpacking zlib sources
[INFO] [stderr] -- Unpacking lzma sources
[INFO] [stderr] -- Check if the system is big endian
[INFO] [stderr] -- Searching 16 bit integer
[INFO] [stderr] -- Using unsigned short
[INFO] [stderr] -- Check if the system is big endian - little endian
[INFO] [stderr] -- Configuring done
[INFO] [stderr] -- Generating done
[INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-e3f26040a205cae5/out/build
[INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--"
[INFO] [stderr] Scanning dependencies of target fmt
[INFO] [stderr] Scanning dependencies of target lzma
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[INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:182: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o' failed
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[INFO] [stderr] Makefile:129: recipe for target 'all' failed
[INFO] [stderr] 
[INFO] [stderr] --- stderr
[INFO] [stderr] c++: internal compiler error: Killed (program cc1plus)
[INFO] [stderr] Please submit a full bug report,
[INFO] [stderr] with preprocessed source if appropriate.
[INFO] [stderr] See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
[INFO] [stderr] c++: internal compiler error: Killed (program cc1plus)
[INFO] [stderr] Please submit a full bug report,
[INFO] [stderr] with preprocessed source if appropriate.
[INFO] [stderr] See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
[INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 4
[INFO] [stderr] make[2]: *** Waiting for unfinished jobs....
[INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 4
[INFO] [stderr] make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr] make: *** [all] Error 2
[INFO] [stderr] thread 'main' panicked at '
[INFO] [stderr] command did not execute successfully, got: exit code: 2
[INFO] [stderr] 
[INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:832:5
[INFO] [stderr] stack backtrace:
[INFO] [stderr]    0:     0x55a010f61ef4 - backtrace::backtrace::libunwind::trace::h9e598fcb10d5c4f5
[INFO] [stderr]                                at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86
[INFO] [stderr]    1:     0x55a010f61ef4 - backtrace::backtrace::trace_unsynchronized::hbfbd58fbb4a2603e
[INFO] [stderr]                                at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66
[INFO] [stderr]    2:     0x55a010f61ef4 - std::sys_common::backtrace::_print_fmt::hacb596a8013761df
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:78
[INFO] [stderr]    3:     0x55a010f61ef4 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::ha1ba73c9085723eb
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:59
[INFO] [stderr]    4:     0x55a010f8707c - core::fmt::write::hb4ac1e8a8c800611
[INFO] [stderr]                                at src/libcore/fmt/mod.rs:1069
[INFO] [stderr]    5:     0x55a010f5e673 - std::io::Write::write_fmt::ha413e6029f4d499f
[INFO] [stderr]                                at src/libstd/io/mod.rs:1504
[INFO] [stderr]    6:     0x55a010f64b35 - std::sys_common::backtrace::_print::h5afa8b3832cd03b8
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:62
[INFO] [stderr]    7:     0x55a010f64b35 - std::sys_common::backtrace::print::h49229e3486b70f83
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:49
[INFO] [stderr]    8:     0x55a010f64b35 - std::panicking::default_hook::{{closure}}::hcfefd5f4943f3aa9
[INFO] [stderr]                                at src/libstd/panicking.rs:198
[INFO] [stderr]    9:     0x55a010f64872 - std::panicking::default_hook::h4c2b6d8d034c53de
[INFO] [stderr]                                at src/libstd/panicking.rs:218
[INFO] [stderr]   10:     0x55a010f65192 - std::panicking::rust_panic_with_hook::hf8cee70c0118d2cc
[INFO] [stderr]                                at src/libstd/panicking.rs:511
[INFO] [stderr]   11:     0x55a010f64d7b - rust_begin_unwind
[INFO] [stderr]                                at src/libstd/panicking.rs:419
[INFO] [stderr]   12:     0x55a010f64ceb - std::panicking::begin_panic_fmt::h58dd034954c7216c
[INFO] [stderr]                                at src/libstd/panicking.rs:373
[INFO] [stderr]   13:     0x55a010efde17 - cmake::fail::hd88d28806c0229d3
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:832
[INFO] [stderr]   14:     0x55a010efd75c - cmake::run::h433017999234409b
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:810
[INFO] [stderr]   15:     0x55a010ef9e57 - cmake::Config::build::h217e0ceb8c2d455d
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.40/src/lib.rs:719
[INFO] [stderr]   16:     0x55a010ef54d8 - build_script_build::build_chemfiles::h6f8a2b06faa64889
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.1/build.rs:18
[INFO] [stderr]   17:     0x55a010ef52fe - build_script_build::main::h195a02e7a6359baa
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.9.1/build.rs:8
[INFO] [stderr]   18:     0x55a010ef4dfb - std::rt::lang_start::{{closure}}::hc7daac5601c2859c
[INFO] [stderr]                                at /rustc/209b2be09fcaff937480d1fbbe8b31646e361c7a/src/libstd/rt.rs:67
[INFO] [stderr]   19:     0x55a010f655d8 - std::rt::lang_start_internal::{{closure}}::h4c4631d379953dd0
[INFO] [stderr]                                at src/libstd/rt.rs:52
[INFO] [stderr]   20:     0x55a010f655d8 - std::panicking::try::do_call::hc26b3db2421dedbb
[INFO] [stderr]                                at src/libstd/panicking.rs:331
[INFO] [stderr]   21:     0x55a010f655d8 - std::panicking::try::h4da6835c8705b8a7
[INFO] [stderr]                                at src/libstd/panicking.rs:274
[INFO] [stderr]   22:     0x55a010f655d8 - std::panic::catch_unwind::h02aff520273fa6b1
[INFO] [stderr]                                at src/libstd/panic.rs:394
[INFO] [stderr]   23:     0x55a010f655d8 - std::rt::lang_start_internal::he0572ca212cb5ef4
[INFO] [stderr]                                at src/libstd/rt.rs:51
[INFO] [stderr]   24:     0x55a010ef4dd7 - std::rt::lang_start::h2427f51327aeb6b8
[INFO] [stderr]                                at /rustc/209b2be09fcaff937480d1fbbe8b31646e361c7a/src/libstd/rt.rs:67
[INFO] [stderr]   25:     0x55a010ef5dda - main
[INFO] [stderr]   26:     0x7f9dbc6c9b97 - __libc_start_main
[INFO] [stderr]   27:     0x55a010ef4a9a - _start
[INFO] [stderr]   28:                0x0 - <unknown>
[INFO] [stderr] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "31e83314ad6af691a80679a72737fe3b8f126e289692f41277a0f6b81db7cb83"`
[INFO] running `"docker" "rm" "-f" "31e83314ad6af691a80679a72737fe3b8f126e289692f41277a0f6b81db7cb83"`
[INFO] [stdout] 31e83314ad6af691a80679a72737fe3b8f126e289692f41277a0f6b81db7cb83
