[INFO] crate flann-sys 0.1.0 is already in cache
[INFO] checking flann-sys-0.1.0 against master#209b2be09fcaff937480d1fbbe8b31646e361c7a for pr-70917
[INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-7/source
[INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 209b2be09fcaff937480d1fbbe8b31646e361c7a
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate flann-sys 0.1.0
[INFO] finished tweaking crates.io crate flann-sys 0.1.0
[INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/workspace/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+209b2be09fcaff937480d1fbbe8b31646e361c7a" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 0be821bb5ba57bd36341d08ca516c1d0776d59ddb62d1d177d0054aa24729b71
[INFO] running `"docker" "start" "-a" "0be821bb5ba57bd36341d08ca516c1d0776d59ddb62d1d177d0054aa24729b71"`
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]    Compiling flann-sys v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-aa5ec16dd288bba2/build-script-build` (exit code: 101)
[INFO] [stderr] --- stdout
[INFO] [stderr] cargo:rustc-link-lib=gomp
[INFO] [stderr] cargo:rustc-link-lib=stdc++
[INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-46428f2d65c4802d/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr] -- The C compiler identification is GNU 7.5.0
[INFO] [stderr] -- The CXX compiler identification is GNU 7.5.0
[INFO] [stderr] -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr] -- Detecting C compiler ABI info
[INFO] [stderr] -- Detecting C compiler ABI info - done
[INFO] [stderr] -- Detecting C compile features
[INFO] [stderr] -- Detecting C compile features - done
[INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr] -- Detecting CXX compiler ABI info
[INFO] [stderr] -- Detecting CXX compiler ABI info - done
[INFO] [stderr] -- Detecting CXX compile features
[INFO] [stderr] -- Detecting CXX compile features - done
[INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.17") 
[INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "")
[INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) 
[INFO] [stderr] -- Found OpenMP_C: -fopenmp  
[INFO] [stderr] -- Found OpenMP_CXX: -fopenmp  
[INFO] [stderr] -- Found OpenMP: TRUE   
[INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-46428f2d65c4802d/out
[INFO] [stderr] -- Build type: Debug
[INFO] [stderr] -- Building C bindings: ON
[INFO] [stderr] -- Building examples: OFF
[INFO] [stderr] -- Building tests: OFF
[INFO] [stderr] -- Building documentation: OFF
[INFO] [stderr] -- Building python bindings: OFF
[INFO] [stderr] -- Building matlab bindings: OFF
[INFO] [stderr] -- Building CUDA library: OFF
[INFO] [stderr] -- Using OpenMP support: ON
[INFO] [stderr] -- Using MPI support: OFF
[INFO] [stderr] -- Configuring incomplete, errors occurred!
[INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-46428f2d65c4802d/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr] --- stderr
[INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message):
[INFO] [stderr]   hdf5 library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message):
[INFO] [stderr]   gtest library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if):
[INFO] [stderr]   if given arguments:
[INFO] [stderr] 
[INFO] [stderr]     "TRUE"
[INFO] [stderr] 
[INFO] [stderr]   An argument named "TRUE" appears in a conditional statement.  Policy
[INFO] [stderr]   CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
[INFO] [stderr]   "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
[INFO] [stderr]   command to set the policy and suppress this warning.
[INFO] [stderr] Call Stack (most recent call first):
[INFO] [stderr]   /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE)
[INFO] [stderr]   CMakeLists.txt:122 (find_package)
[INFO] [stderr] This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:310 (if):
[INFO] [stderr]   if given arguments:
[INFO] [stderr] 
[INFO] [stderr]     "TRUE"
[INFO] [stderr] 
[INFO] [stderr]   An argument named "TRUE" appears in a conditional statement.  Policy
[INFO] [stderr]   CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
[INFO] [stderr]   "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
[INFO] [stderr]   command to set the policy and suppress this warning.
[INFO] [stderr] Call Stack (most recent call first):
[INFO] [stderr]   /usr/share/cmake-3.10/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE)
[INFO] [stderr]   CMakeLists.txt:122 (find_package)
[INFO] [stderr] This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp
[INFO] [stderr] CMake Error: : System Error: Read-only file system
[INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file):
[INFO] [stderr]   configure_file Problem configuring file
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] thread 'main' panicked at '
[INFO] [stderr] command did not execute successfully, got: exit code: 1
[INFO] [stderr] 
[INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5
[INFO] [stderr] stack backtrace:
[INFO] [stderr]    0:     0x56061c251834 - backtrace::backtrace::libunwind::trace::h9e598fcb10d5c4f5
[INFO] [stderr]                                at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86
[INFO] [stderr]    1:     0x56061c251834 - backtrace::backtrace::trace_unsynchronized::hbfbd58fbb4a2603e
[INFO] [stderr]                                at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66
[INFO] [stderr]    2:     0x56061c251834 - std::sys_common::backtrace::_print_fmt::hacb596a8013761df
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:78
[INFO] [stderr]    3:     0x56061c251834 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::ha1ba73c9085723eb
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:59
[INFO] [stderr]    4:     0x56061c27d71c - core::fmt::write::hb4ac1e8a8c800611
[INFO] [stderr]                                at src/libcore/fmt/mod.rs:1069
[INFO] [stderr]    5:     0x56061c24d9f3 - std::io::Write::write_fmt::ha413e6029f4d499f
[INFO] [stderr]                                at src/libstd/io/mod.rs:1504
[INFO] [stderr]    6:     0x56061c254675 - std::sys_common::backtrace::_print::h5afa8b3832cd03b8
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:62
[INFO] [stderr]    7:     0x56061c254675 - std::sys_common::backtrace::print::h49229e3486b70f83
[INFO] [stderr]                                at src/libstd/sys_common/backtrace.rs:49
[INFO] [stderr]    8:     0x56061c254675 - std::panicking::default_hook::{{closure}}::hcfefd5f4943f3aa9
[INFO] [stderr]                                at src/libstd/panicking.rs:198
[INFO] [stderr]    9:     0x56061c2543b2 - std::panicking::default_hook::h4c2b6d8d034c53de
[INFO] [stderr]                                at src/libstd/panicking.rs:218
[INFO] [stderr]   10:     0x56061c254cd2 - std::panicking::rust_panic_with_hook::hf8cee70c0118d2cc
[INFO] [stderr]                                at src/libstd/panicking.rs:511
[INFO] [stderr]   11:     0x56061c2548bb - rust_begin_unwind
[INFO] [stderr]                                at src/libstd/panicking.rs:419
[INFO] [stderr]   12:     0x56061c25482b - std::panicking::begin_panic_fmt::h58dd034954c7216c
[INFO] [stderr]                                at src/libstd/panicking.rs:373
[INFO] [stderr]   13:     0x56061bccc9b7 - cmake::fail::hdb13a4b917684397
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861
[INFO] [stderr]   14:     0x56061bccc2fc - cmake::run::hb0a44602bcbba88a
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839
[INFO] [stderr]   15:     0x56061bcc7d05 - cmake::Config::build::h5d89e49edb52f331
[INFO] [stderr]                                at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:674
[INFO] [stderr]   16:     0x56061bcc2c22 - build_script_build::main::h91fa2e89d6b0520a
[INFO] [stderr]                                at /opt/rustwide/workdir/build.rs:30
[INFO] [stderr]   17:     0x56061bcc334b - std::rt::lang_start::{{closure}}::hc8e8da4bed69ea91
[INFO] [stderr]                                at /rustc/209b2be09fcaff937480d1fbbe8b31646e361c7a/src/libstd/rt.rs:67
[INFO] [stderr]   18:     0x56061c255118 - std::rt::lang_start_internal::{{closure}}::h4c4631d379953dd0
[INFO] [stderr]                                at src/libstd/rt.rs:52
[INFO] [stderr]   19:     0x56061c255118 - std::panicking::try::do_call::hc26b3db2421dedbb
[INFO] [stderr]                                at src/libstd/panicking.rs:331
[INFO] [stderr]   20:     0x56061c255118 - std::panicking::try::h4da6835c8705b8a7
[INFO] [stderr]                                at src/libstd/panicking.rs:274
[INFO] [stderr]   21:     0x56061c255118 - std::panic::catch_unwind::h02aff520273fa6b1
[INFO] [stderr]                                at src/libstd/panic.rs:394
[INFO] [stderr]   22:     0x56061c255118 - std::rt::lang_start_internal::he0572ca212cb5ef4
[INFO] [stderr]                                at src/libstd/rt.rs:51
[INFO] [stderr]   23:     0x56061bcc3327 - std::rt::lang_start::h36b27a912ebbedae
[INFO] [stderr]                                at /rustc/209b2be09fcaff937480d1fbbe8b31646e361c7a/src/libstd/rt.rs:67
[INFO] [stderr]   24:     0x56061bcc302a - main
[INFO] [stderr]   25:     0x7fb5e0175b97 - __libc_start_main
[INFO] [stderr]   26:     0x56061bcc28ba - _start
[INFO] [stderr]   27:                0x0 - <unknown>
[INFO] [stderr] 
[INFO] running `"docker" "inspect" "0be821bb5ba57bd36341d08ca516c1d0776d59ddb62d1d177d0054aa24729b71"`
[INFO] running `"docker" "rm" "-f" "0be821bb5ba57bd36341d08ca516c1d0776d59ddb62d1d177d0054aa24729b71"`
[INFO] [stdout] 0be821bb5ba57bd36341d08ca516c1d0776d59ddb62d1d177d0054aa24729b71
