[INFO] crate phyloprob 0.1.2 is already in cache
[INFO] checking phyloprob-0.1.2 against master#3dbade652ed8ebac70f903e01f51cd92c4e4302c for pr-69880
[INFO] extracting crate phyloprob 0.1.2 into /workspace/builds/worker-2/source
[INFO] validating manifest of crates.io crate phyloprob 0.1.2 on toolchain 3dbade652ed8ebac70f903e01f51cd92c4e4302c
[INFO] running `"/workspace/cargo-home/bin/cargo" "+3dbade652ed8ebac70f903e01f51cd92c4e4302c" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate phyloprob 0.1.2
[INFO] finished tweaking crates.io crate phyloprob 0.1.2
[INFO] tweaked toml for crates.io crate phyloprob 0.1.2 written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate crates.io crate phyloprob 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+3dbade652ed8ebac70f903e01f51cd92c4e4302c" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+3dbade652ed8ebac70f903e01f51cd92c4e4302c" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] edb9228e70a74e258a32c6d9a0f5d22662910fce0a299011657dcf1546120a71
[INFO] running `"docker" "start" "-a" "edb9228e70a74e258a32c6d9a0f5d22662910fce0a299011657dcf1546120a71"`
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]     Checking ucd-util v0.1.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking bio-seq-algos v0.1.15
[INFO] [stderr]     Checking bstr v0.2.11
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking rna-ss-params v0.1.16
[INFO] [stderr]     Checking regex-syntax v0.5.6
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking regex v0.2.11
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]     Checking rna-algos v0.1.14
[INFO] [stderr]     Checking phyloprob v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/utils.rs:9:1
[INFO] [stderr]    |
[INFO] [stderr] 9  | / lazy_static! {
[INFO] [stderr] 10 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stderr] 11 | |     [
[INFO] [stderr] 12 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stderr] ...  |
[INFO] [stderr] 29 | |   pub static ref EXP_RIBOSUM_85_60_BPA_SCORE_MAT: BpaScoreMat = {RIBOSUM_85_60_BPA_SCORE_MAT.iter().map(|(base_quadruple, &bpa_score)| {(*base_quadruple, bpa_score.exp())}).collect()};
[INFO] [stderr] 30 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 15.78s
[INFO] running `"docker" "inspect" "edb9228e70a74e258a32c6d9a0f5d22662910fce0a299011657dcf1546120a71"`
[INFO] running `"docker" "rm" "-f" "edb9228e70a74e258a32c6d9a0f5d22662910fce0a299011657dcf1546120a71"`
[INFO] [stdout] edb9228e70a74e258a32c6d9a0f5d22662910fce0a299011657dcf1546120a71