[INFO] updating cached repository https://github.com/0ncorhynchus/pdbstat [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109 [INFO] checking 0ncorhynchus/pdbstat against master#eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc for pr-69560 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-8/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc [INFO] running `"/workspace/cargo-home/bin/cargo" "+eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat [INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9ddd5e5ae991b0616c85053a54dd3e2040d3a3a02e2dc335e26c0140b1ca8025 [INFO] running `"docker" "start" "-a" "9ddd5e5ae991b0616c85053a54dd3e2040d3a3a02e2dc335e26c0140b1ca8025"` [INFO] [stderr] Compiling gcc v0.3.51 [INFO] [stderr] Checking libc v0.2.24 [INFO] [stderr] Compiling cmake v0.1.24 [INFO] [stderr] Compiling chemfiles-sys v0.7.40 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-f09b9d5e30b90399/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-3f031945b836da8a/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 7.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 7.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-3f031945b836da8a/out/build [INFO] [stderr] running: "cmake" "--build" "." 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[INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/capi/frame.cpp.o] Error 4 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/Trajectory.cpp.o] Error 4 [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/capi/trajectory.cpp.o] Error 4 [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/Frame.cpp.o] Error 4 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/capi/atom.cpp.o] Error 4 [INFO] [stderr] make[1]: *** [chemfiles/CMakeFiles/chemfiles.dir/all] Error 2 [INFO] [stderr] make: *** [all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55db66bbbb24 - backtrace::backtrace::libunwind::trace::h9969d01c3d7ddfdc [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.44/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55db66bbbb24 - backtrace::backtrace::trace_unsynchronized::h7a2ab063e77952ab [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.44/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55db66bbbb24 - std::sys_common::backtrace::_print_fmt::h1b217822a512fc5b [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55db66bbbb24 - ::fmt::h96fb4331ad79020d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55db66bdbd5c - core::fmt::write::hc201330da9c33c5d [INFO] [stderr] at src/libcore/fmt/mod.rs:1053 [INFO] [stderr] 5: 0x55db66bb8587 - std::io::Write::write_fmt::h309332b527674af9 [INFO] [stderr] at src/libstd/io/mod.rs:1428 [INFO] [stderr] 6: 0x55db66bbe635 - std::sys_common::backtrace::_print::h9ef4e37c06092ebe [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55db66bbe635 - std::sys_common::backtrace::print::h2a9175f5cd9eccf0 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55db66bbe635 - std::panicking::default_hook::{{closure}}::ha832c9ee735a1b99 [INFO] [stderr] at src/libstd/panicking.rs:204 [INFO] [stderr] 9: 0x55db66bbe377 - std::panicking::default_hook::hddac80d07a5399db [INFO] [stderr] at src/libstd/panicking.rs:224 [INFO] [stderr] 10: 0x55db66bbebf2 - std::panicking::rust_panic_with_hook::haa6a112655213edb [INFO] [stderr] at src/libstd/panicking.rs:470 [INFO] [stderr] 11: 0x55db66bbe7db - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:378 [INFO] [stderr] 12: 0x55db66bbe74b - std::panicking::begin_panic_fmt::h3458bf542f535af6 [INFO] [stderr] at src/libstd/panicking.rs:332 [INFO] [stderr] 13: 0x55db66b7f167 - cmake::fail::h0dc741a5e335dd4b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593 [INFO] [stderr] 14: 0x55db66b7ea9c - cmake::run::h060b0b3225267c3a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574 [INFO] [stderr] 15: 0x55db66b7be69 - cmake::Config::build::hf812ccd53d9d01cd [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481 [INFO] [stderr] 16: 0x55db66b7613b - build_script_build::main::hbeb55ad2fd5151ed [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19 [INFO] [stderr] 17: 0x55db66b777db - std::rt::lang_start::{{closure}}::h3a3f9e2c2bea5f6b [INFO] [stderr] at /rustc/eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x55db66bbe703 - std::rt::lang_start_internal::{{closure}}::h80386bdbf19e8f1d [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x55db66bbe703 - std::panicking::try::do_call::he1209bc3d4aaf715 [INFO] [stderr] at src/libstd/panicking.rs:303 [INFO] [stderr] 20: 0x55db66bc64d7 - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:86 [INFO] [stderr] 21: 0x55db66bbf099 - std::panicking::try::hf520d8976c058f40 [INFO] [stderr] at src/libstd/panicking.rs:281 [INFO] [stderr] 22: 0x55db66bbf099 - std::panic::catch_unwind::h7564024f837c4151 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 23: 0x55db66bbf099 - std::rt::lang_start_internal::h41ae6763c6895ece [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 24: 0x55db66b777b7 - std::rt::lang_start::h997ee3a8f4e652aa [INFO] [stderr] at /rustc/eaa02f599f651246d5d1b99e7a4c6fa8d04bc9dc/src/libstd/rt.rs:67 [INFO] [stderr] 25: 0x55db66b76d3a - main [INFO] [stderr] 26: 0x7f8610dc7b97 - __libc_start_main [INFO] [stderr] 27: 0x55db66b75eca - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "9ddd5e5ae991b0616c85053a54dd3e2040d3a3a02e2dc335e26c0140b1ca8025"` [INFO] running `"docker" "rm" "-f" "9ddd5e5ae991b0616c85053a54dd3e2040d3a3a02e2dc335e26c0140b1ca8025"` [INFO] [stdout] 9ddd5e5ae991b0616c85053a54dd3e2040d3a3a02e2dc335e26c0140b1ca8025