[INFO] crate neuro 0.1.0 is already in cache [INFO] checking neuro-0.1.0 against try#1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0 for pr-69530 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0 [INFO] running `"/workspace/cargo-home/bin/cargo" "+1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a21de0b2ce9b5dc27b3ea4afa9eb4804a0d9bde4d9a642de07e3333339af61fd [INFO] running `"docker" "start" "-a" "a21de0b2ce9b5dc27b3ea4afa9eb4804a0d9bde4d9a642de07e3333339af61fd"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling aho-corasick v0.7.9 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking rand v0.6.5 [INFO] [stderr] Checking num-bigint v0.2.6 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Checking crossbeam-epoch v0.8.2 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-e9c57649033e97a7/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ba9bde5184 - backtrace::backtrace::libunwind::trace::h4c42d7a28713e66c [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.44/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55ba9bde5184 - backtrace::backtrace::trace_unsynchronized::hea5bb01664ae4a3b [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.44/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55ba9bde5184 - std::sys_common::backtrace::_print_fmt::h84e640c363e9906a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55ba9bde5184 - ::fmt::hcd6ef3b391ce8f42 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55ba9be0491c - core::fmt::write::h339351c8e5383b2b [INFO] [stderr] at src/libcore/fmt/mod.rs:1053 [INFO] [stderr] 5: 0x55ba9bde1ea7 - std::io::Write::write_fmt::h9d839029d2da7e4b [INFO] [stderr] at src/libstd/io/mod.rs:1428 [INFO] [stderr] 6: 0x55ba9bde7765 - std::sys_common::backtrace::_print::h236df9224a3e0798 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55ba9bde7765 - std::sys_common::backtrace::print::hec3df07a76753185 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55ba9bde7765 - std::panicking::default_hook::{{closure}}::h42e034bee82e8964 [INFO] [stderr] at src/libstd/panicking.rs:204 [INFO] [stderr] 9: 0x55ba9bde74a7 - std::panicking::default_hook::hca8e29f89a1fe45d [INFO] [stderr] at src/libstd/panicking.rs:224 [INFO] [stderr] 10: 0x55ba9bde7d72 - std::panicking::rust_panic_with_hook::h7f4cdeab0774c3aa [INFO] [stderr] at src/libstd/panicking.rs:470 [INFO] [stderr] 11: 0x55ba9bbcdbb1 - std::panicking::begin_panic::h57e7e7dd9499e178 [INFO] [stderr] at /rustc/1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0/src/libstd/panicking.rs:397 [INFO] [stderr] 12: 0x55ba9bb9c81c - build_script_build::LibrarySearcher::try_locate_hdf5_library::hb2798281462e5b8a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 13: 0x55ba9bb9dc0c - build_script_build::main::hccaee503a3422271 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 14: 0x55ba9bbaa86b - std::rt::lang_start::{{closure}}::h9fb003ea134fab6f [INFO] [stderr] at /rustc/1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55ba9bde7833 - std::rt::lang_start_internal::{{closure}}::h4be81bc73aab0ad7 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55ba9bde7833 - std::panicking::try::do_call::h939cc44d5708b5fd [INFO] [stderr] at src/libstd/panicking.rs:303 [INFO] [stderr] 17: 0x55ba9bdeee17 - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:86 [INFO] [stderr] 18: 0x55ba9bde8219 - std::panicking::try::ha798276602052e14 [INFO] [stderr] at src/libstd/panicking.rs:281 [INFO] [stderr] 19: 0x55ba9bde8219 - std::panic::catch_unwind::h65fa2b034e543427 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 20: 0x55ba9bde8219 - std::rt::lang_start_internal::hfc215951a8372eea [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 21: 0x55ba9bbaa847 - std::rt::lang_start::h6d32c8553544d37e [INFO] [stderr] at /rustc/1cdff26b98d4c2377ea6ae8929f1daebbf58f2b0/src/libstd/rt.rs:67 [INFO] [stderr] 22: 0x55ba9bb9e74a - main [INFO] [stderr] 23: 0x7f01000f40b3 - __libc_start_main [INFO] [stderr] 24: 0x55ba9bb9819e - _start [INFO] [stderr] 25: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "a21de0b2ce9b5dc27b3ea4afa9eb4804a0d9bde4d9a642de07e3333339af61fd"` [INFO] running `"docker" "rm" "-f" "a21de0b2ce9b5dc27b3ea4afa9eb4804a0d9bde4d9a642de07e3333339af61fd"` [INFO] [stdout] a21de0b2ce9b5dc27b3ea4afa9eb4804a0d9bde4d9a642de07e3333339af61fd