[INFO] crate hdf5 0.6.1 is already in cache [INFO] checking hdf5-0.6.1 against master#6d69caba110c0c2fb90180df1cbc8be5033b91d4 for pr-69530 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 6d69caba110c0c2fb90180df1cbc8be5033b91d4 [INFO] running `"/workspace/cargo-home/bin/cargo" "+6d69caba110c0c2fb90180df1cbc8be5033b91d4" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+6d69caba110c0c2fb90180df1cbc8be5033b91d4" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+6d69caba110c0c2fb90180df1cbc8be5033b91d4" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6dca71a0c1acec0efc19f90afba473895f1dd35d7195641e00c2e7705d994c26 [INFO] running `"docker" "start" "-a" "6dca71a0c1acec0efc19f90afba473895f1dd35d7195641e00c2e7705d994c26"` [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1850cbbbfcf9afe2/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5623cac32b14 - backtrace::backtrace::libunwind::trace::he807ad0519c11e8d [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.44/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x5623cac32b14 - backtrace::backtrace::trace_unsynchronized::h85bf5ebf53f3e79a [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.44/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5623cac32b14 - std::sys_common::backtrace::_print_fmt::h3298485d15f6bf8f [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x5623cac32b14 - ::fmt::h9c1cc352997356e8 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x5623cac5230c - core::fmt::write::h32cac060b41ae4df [INFO] [stderr] at src/libcore/fmt/mod.rs:1053 [INFO] [stderr] 5: 0x5623cac2f837 - std::io::Write::write_fmt::h4b92e010fec92190 [INFO] [stderr] at src/libstd/io/mod.rs:1428 [INFO] [stderr] 6: 0x5623cac350f5 - std::sys_common::backtrace::_print::h38b83ef3372fad71 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x5623cac350f5 - std::sys_common::backtrace::print::hcb4a0f695e1ec3b7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x5623cac350f5 - std::panicking::default_hook::{{closure}}::h2e8f9cd7d4cd4692 [INFO] [stderr] at src/libstd/panicking.rs:204 [INFO] [stderr] 9: 0x5623cac34e37 - std::panicking::default_hook::h1e9aeac01791e6cc [INFO] [stderr] at src/libstd/panicking.rs:224 [INFO] [stderr] 10: 0x5623cac35702 - std::panicking::rust_panic_with_hook::h651549a5859dff90 [INFO] [stderr] at src/libstd/panicking.rs:470 [INFO] [stderr] 11: 0x5623caa1f1e1 - std::panicking::begin_panic::h4ef07f127c7239c5 [INFO] [stderr] at /rustc/6d69caba110c0c2fb90180df1cbc8be5033b91d4/src/libstd/panicking.rs:397 [INFO] [stderr] 12: 0x5623ca9ed64c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4b2705cd7ef180c8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x5623ca9eea3c - build_script_build::main::hc8f4f473ab20fc22 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x5623ca9f909b - std::rt::lang_start::{{closure}}::hf7a256b5ad1fea27 [INFO] [stderr] at /rustc/6d69caba110c0c2fb90180df1cbc8be5033b91d4/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x5623cac351c3 - std::rt::lang_start_internal::{{closure}}::h471f8ba71a80c8e3 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x5623cac351c3 - std::panicking::try::do_call::hd059bb209a35d92f [INFO] [stderr] at src/libstd/panicking.rs:303 [INFO] [stderr] 17: 0x5623cac3c807 - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:86 [INFO] [stderr] 18: 0x5623cac35ba9 - std::panicking::try::h2452c1b92d9235ae [INFO] [stderr] at src/libstd/panicking.rs:281 [INFO] [stderr] 19: 0x5623cac35ba9 - std::panic::catch_unwind::h3d5a9024a61f002e [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 20: 0x5623cac35ba9 - std::rt::lang_start_internal::hd388fc716683de35 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 21: 0x5623ca9f9077 - std::rt::lang_start::h9e95baa5d67a9c60 [INFO] [stderr] at /rustc/6d69caba110c0c2fb90180df1cbc8be5033b91d4/src/libstd/rt.rs:67 [INFO] [stderr] 22: 0x5623ca9ef4fa - main [INFO] [stderr] 23: 0x7f0f8ae09b97 - __libc_start_main [INFO] [stderr] 24: 0x5623ca9e8ffa - _start [INFO] [stderr] 25: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "6dca71a0c1acec0efc19f90afba473895f1dd35d7195641e00c2e7705d994c26"` [INFO] running `"docker" "rm" "-f" "6dca71a0c1acec0efc19f90afba473895f1dd35d7195641e00c2e7705d994c26"` [INFO] [stdout] 6dca71a0c1acec0efc19f90afba473895f1dd35d7195641e00c2e7705d994c26