[INFO] updating cached repository https://github.com/rhysnewell/Kallisto_Indexer
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] fb2da531c4e51b75f98c9782bc949a5d3d711a18
[INFO] checking rhysnewell/Kallisto_Indexer against master#b1f395de642e8be7bcbbd2bd8aaadab715851f49 for pr-69410
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer" "/workspace/builds/worker-8/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/rhysnewell/Kallisto_Indexer on toolchain b1f395de642e8be7bcbbd2bd8aaadab715851f49
[INFO] running `"/workspace/cargo-home/bin/cargo" "+b1f395de642e8be7bcbbd2bd8aaadab715851f49" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] finished tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] tweaked toml for git repo https://github.com/rhysnewell/Kallisto_Indexer written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/rhysnewell/Kallisto_Indexer already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+b1f395de642e8be7bcbbd2bd8aaadab715851f49" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+b1f395de642e8be7bcbbd2bd8aaadab715851f49" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] ffc1568325d39680e6f69b6b5b5b012db0add46e1bba05303e9543056694f2b3
[INFO] running `"docker" "start" "-a" "ffc1568325d39680e6f69b6b5b5b012db0add46e1bba05303e9543056694f2b3"`
[INFO] [stderr]    Compiling serde v1.0.79
[INFO] [stderr]    Compiling utf8-ranges v1.0.1
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking environment v0.1.1
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling filetime v0.2.1
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling libz-sys v1.0.23
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]     Checking tempfile v3.0.4
[INFO] [stderr]     Checking num-complex v0.1.43
[INFO] [stderr]     Checking itertools-num v0.1.2
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling lzma-sys v0.1.10
[INFO] [stderr]     Checking colored v1.6.1
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling aho-corasick v0.6.8
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]     Checking regex v0.2.11
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]     Checking env_logger v0.4.3
[INFO] [stderr]    Compiling regex v1.0.5
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.3.0
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking csv v1.0.2
[INFO] [stderr]     Checking serde_json v1.0.31
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]     Checking assert_cli v0.6.3
[INFO] [stderr] error[E0415]: identifier `t` is bound more than once in this parameter list
[INFO] [stderr]   --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-0.20.3/src/data_structures/bit_tree.rs:33:24
[INFO] [stderr]    |
[INFO] [stderr] 33 |     fn operation(t: T, t: T) -> T;
[INFO] [stderr]    |                        ^ used as parameter more than once
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to previous error
[INFO] [stderr] 
[INFO] [stderr] For more information about this error, try `rustc --explain E0415`.
[INFO] [stderr] error: could not compile `bio`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "ffc1568325d39680e6f69b6b5b5b012db0add46e1bba05303e9543056694f2b3"`
[INFO] running `"docker" "rm" "-f" "ffc1568325d39680e6f69b6b5b5b012db0add46e1bba05303e9543056694f2b3"`
[INFO] [stdout] ffc1568325d39680e6f69b6b5b5b012db0add46e1bba05303e9543056694f2b3