[INFO] crate rna-algos 0.1.10 is already in cache
[INFO] checking rna-algos-0.1.10 against master#0cbcb17d3306d6e22eafc2c05ce885db97d0189c for pr-68766
[INFO] extracting crate rna-algos 0.1.10 into /workspace/builds/worker-2/source
[INFO] validating manifest of crates.io crate rna-algos 0.1.10 on toolchain 0cbcb17d3306d6e22eafc2c05ce885db97d0189c
[INFO] running `"/workspace/cargo-home/bin/cargo" "+0cbcb17d3306d6e22eafc2c05ce885db97d0189c" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate rna-algos 0.1.10
[INFO] finished tweaking crates.io crate rna-algos 0.1.10
[INFO] tweaked toml for crates.io crate rna-algos 0.1.10 written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] running `"/workspace/cargo-home/bin/cargo" "+0cbcb17d3306d6e22eafc2c05ce885db97d0189c" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/workspace/cargo-home/bin/cargo" "+0cbcb17d3306d6e22eafc2c05ce885db97d0189c" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+0cbcb17d3306d6e22eafc2c05ce885db97d0189c" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] ca861897f2fb9e69b1d40c48fb4e2d7f614ab52fbdc63212a2ce7dd75844e936
[INFO] running `"docker" "start" "-a" "ca861897f2fb9e69b1d40c48fb4e2d7f614ab52fbdc63212a2ce7dd75844e936"`
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]     Checking bit-set v0.4.0
[INFO] [stderr]     Checking aho-corasick v0.6.10
[INFO] [stderr]     Checking bio-seq-algos v0.1.14
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]     Checking bstr v0.2.11
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking rna-ss-params v0.1.14
[INFO] [stderr]     Checking regex v0.2.11
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]     Checking rna-algos v0.1.10 (/opt/rustwide/workdir)
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]   --> src/mccaskill_algo.rs:52:39
[INFO] [stderr]    |
[INFO] [stderr] 52 |     let mut eps_of_terms_4_log_prob = EpsOfTerms4LogProb::new();
[INFO] [stderr]    |                                       ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]   --> src/mccaskill_algo.rs:74:39
[INFO] [stderr]    |
[INFO] [stderr] 74 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]    |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]    --> src/mccaskill_algo.rs:105:39
[INFO] [stderr]     |
[INFO] [stderr] 105 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]     |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]    --> src/mccaskill_algo.rs:129:39
[INFO] [stderr]     |
[INFO] [stderr] 129 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]     |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]    --> src/mccaskill_algo.rs:145:39
[INFO] [stderr]     |
[INFO] [stderr] 145 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]     |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]    --> src/mccaskill_algo.rs:180:43
[INFO] [stderr]     |
[INFO] [stderr] 180 |       let mut eps_of_terms_4_log_prob_1 = EpsOfTerms4LogProb::new();
[INFO] [stderr]     |                                           ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]    --> src/mccaskill_algo.rs:181:43
[INFO] [stderr]     |
[INFO] [stderr] 181 |       let mut eps_of_terms_4_log_prob_2 = EpsOfTerms4LogProb::new();
[INFO] [stderr]     |                                           ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]   --> src/mccaskill_algo.rs:52:39
[INFO] [stderr]    |
[INFO] [stderr] 52 |     let mut eps_of_terms_4_log_prob = EpsOfTerms4LogProb::new();
[INFO] [stderr]    |                                       ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]   --> src/mccaskill_algo.rs:74:39
[INFO] [stderr]    |
[INFO] [stderr] 74 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]    |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]    --> src/mccaskill_algo.rs:105:39
[INFO] [stderr]     |
[INFO] [stderr] 105 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]     |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]    --> src/mccaskill_algo.rs:214:41
[INFO] [stderr]     |
[INFO] [stderr] 214 |       let mut eps_of_terms_4_log_prob = EpsOfTerms4LogProb::new();
[INFO] [stderr]     |                                         ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]    --> src/mccaskill_algo.rs:129:39
[INFO] [stderr]     |
[INFO] [stderr] 129 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]     |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr]    --> src/mccaskill_algo.rs:145:39
[INFO] [stderr]     |
[INFO] [stderr] 145 |       let mut eps_of_terms_4_log_pf = EpsOfTerms4LogPf::new();
[INFO] [stderr]     |                                       ^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogPf`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]    --> src/mccaskill_algo.rs:180:43
[INFO] [stderr]     |
[INFO] [stderr] 180 |       let mut eps_of_terms_4_log_prob_1 = EpsOfTerms4LogProb::new();
[INFO] [stderr]     |                                           ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]    --> src/mccaskill_algo.rs:181:43
[INFO] [stderr]     |
[INFO] [stderr] 181 |       let mut eps_of_terms_4_log_prob_2 = EpsOfTerms4LogProb::new();
[INFO] [stderr]     |                                           ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:4:23
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr]   | |                       ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0433]: failed to resolve: use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr]    --> src/mccaskill_algo.rs:214:41
[INFO] [stderr]     |
[INFO] [stderr] 214 |       let mut eps_of_terms_4_log_prob = EpsOfTerms4LogProb::new();
[INFO] [stderr]     |                                         ^^^^^^^^^^^^^^^^^^ use of undeclared type or module `EpsOfTerms4LogProb`
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:4:23
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr]   | |                       ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:5:45
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr]   | |                                             ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:6:35
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr]   | |                                   ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:7:53
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr]   | |                                                     ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogProbMat` in this scope
[INFO] [stderr]   --> src/mccaskill_algo.rs:34:34
[INFO] [stderr]    |
[INFO] [stderr] 34 | pub fn get_bpp_mat(log_bpp_mat: &LogProbMat) -> ProbMat {
[INFO] [stderr]    |                                  ^^^^^^^^^^ help: a type alias with a similar name exists: `LogProb`
[INFO] [stderr]    | 
[INFO] [stderr]   ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-seq-algos-0.1.14/src/utils.rs:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | pub type LogProb = Prob;
[INFO] [stderr]    | ------------------------ similarly named type alias `LogProb` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:5:45
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr]   | |                                             ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogProbMat` in this scope
[INFO] [stderr]   --> src/mccaskill_algo.rs:39:42
[INFO] [stderr]    |
[INFO] [stderr] 39 | pub fn get_log_bpp_mat(seq: SeqSlice) -> LogProbMat {
[INFO] [stderr]    |                                          ^^^^^^^^^^ help: a type alias with a similar name exists: `LogProb`
[INFO] [stderr]    | 
[INFO] [stderr]   ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-seq-algos-0.1.14/src/utils.rs:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | pub type LogProb = Prob;
[INFO] [stderr]    | ------------------------ similarly named type alias `LogProb` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]   --> src/mccaskill_algo.rs:61:31
[INFO] [stderr]    |
[INFO] [stderr] 61 |     unpair_prob_mat[i] = 1. - logsumexp(&eps_of_terms_4_log_prob[..], max_ep_of_term_4_log_prob).exp();
[INFO] [stderr]    |                               ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:103:96
[INFO] [stderr]     |
[INFO] [stderr] 103 |         log_ss_ppf_mats.log_ss_ppf_mat_4_base_pairings[pp_closing_loop.0][pp_closing_loop.1] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                                                                ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:6:35
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr]   | |                                   ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogPpfMat` in this scope
[INFO] [stderr]  --> src/mccaskill_algo.rs:7:53
[INFO] [stderr]   |
[INFO] [stderr] 3 | / pub struct LogSsPpfMats {
[INFO] [stderr] 4 | |   pub log_ss_ppf_mat: LogPpfMat,
[INFO] [stderr] 5 | |   log_ss_ppf_mat_4_rightmost_base_pairings: LogPpfMat,
[INFO] [stderr] 6 | |   log_ss_ppf_mat_4_base_pairings: LogPpfMat,
[INFO] [stderr] 7 | |   log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls: LogPpfMat,
[INFO] [stderr]   | |                                                     ^^^^^^^^^ help: a struct with a similar name exists: `LogSsPpfMats`
[INFO] [stderr] 8 | | }
[INFO] [stderr]   | |_- similarly named struct `LogSsPpfMats` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogProbMat` in this scope
[INFO] [stderr]   --> src/mccaskill_algo.rs:34:34
[INFO] [stderr]    |
[INFO] [stderr] 34 | pub fn get_bpp_mat(log_bpp_mat: &LogProbMat) -> ProbMat {
[INFO] [stderr]    |                                  ^^^^^^^^^^ help: a type alias with a similar name exists: `LogProb`
[INFO] [stderr]    | 
[INFO] [stderr]   ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-seq-algos-0.1.14/src/utils.rs:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | pub type LogProb = Prob;
[INFO] [stderr]    | ------------------------ similarly named type alias `LogProb` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogProbMat` in this scope
[INFO] [stderr]   --> src/mccaskill_algo.rs:39:42
[INFO] [stderr]    |
[INFO] [stderr] 39 | pub fn get_log_bpp_mat(seq: SeqSlice) -> LogProbMat {
[INFO] [stderr]    |                                          ^^^^^^^^^^ help: a type alias with a similar name exists: `LogProb`
[INFO] [stderr]    | 
[INFO] [stderr]   ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-seq-algos-0.1.14/src/utils.rs:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | pub type LogProb = Prob;
[INFO] [stderr]    | ------------------------ similarly named type alias `LogProb` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]   --> src/mccaskill_algo.rs:61:31
[INFO] [stderr]    |
[INFO] [stderr] 61 |     unpair_prob_mat[i] = 1. - logsumexp(&eps_of_terms_4_log_prob[..], max_ep_of_term_4_log_prob).exp();
[INFO] [stderr]    |                               ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:103:96
[INFO] [stderr]     |
[INFO] [stderr] 103 |         log_ss_ppf_mats.log_ss_ppf_mat_4_base_pairings[pp_closing_loop.0][pp_closing_loop.1] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                                                                ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:127:74
[INFO] [stderr]     |
[INFO] [stderr] 127 |         log_ss_ppf_mats.log_ss_ppf_mat_4_rightmost_base_pairings[i][j] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                                          ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:127:74
[INFO] [stderr]     |
[INFO] [stderr] 127 |         log_ss_ppf_mats.log_ss_ppf_mat_4_rightmost_base_pairings[i][j] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                                          ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:143:48
[INFO] [stderr]     |
[INFO] [stderr] 143 |         log_ss_ppf_mats.log_ss_ppf_mat[i][j] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:143:48
[INFO] [stderr]     |
[INFO] [stderr] 143 |         log_ss_ppf_mats.log_ss_ppf_mat[i][j] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:164:82
[INFO] [stderr]     |
[INFO] [stderr] 164 |         log_ss_ppf_mats.log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls[i][j] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                                                  ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogProbMat` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:172:100
[INFO] [stderr]     |
[INFO] [stderr] 172 | fn get_log_base_pairing_prob_mat(seq: SeqSlice, log_ss_ppf_mats: &LogSsPpfMats, seq_len: usize) -> LogProbMat {
[INFO] [stderr]     |                                                                                                    ^^^^^^^^^^ help: a type alias with a similar name exists: `LogProb`
[INFO] [stderr]     | 
[INFO] [stderr]    ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-seq-algos-0.1.14/src/utils.rs:10:1
[INFO] [stderr]     |
[INFO] [stderr] 10  | pub type LogProb = Prob;
[INFO] [stderr]     | ------------------------ similarly named type alias `LogProb` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:205:38
[INFO] [stderr]     |
[INFO] [stderr] 205 |         log_prob_mat_4_mls_1[i][j] = logsumexp(&eps_of_terms_4_log_prob_1[..], max_ep_of_term_4_log_prob_1);
[INFO] [stderr]     |                                      ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:208:38
[INFO] [stderr]     |
[INFO] [stderr] 208 |         log_prob_mat_4_mls_2[i][j] = logsumexp(&eps_of_terms_4_log_prob_2[..], max_ep_of_term_4_log_prob_2);
[INFO] [stderr]     |                                      ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:270:57
[INFO] [stderr]     |
[INFO] [stderr] 270 |         log_bpp_mat[accessible_pp.0][accessible_pp.1] = logsumexp(&eps_of_terms_4_log_prob[..], max_ep_of_term_4_log_prob);
[INFO] [stderr]     |                                                         ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:164:82
[INFO] [stderr]     |
[INFO] [stderr] 164 |         log_ss_ppf_mats.log_ss_ppf_mat_4_at_least_1_base_pairings_on_mls[i][j] = logsumexp(&eps_of_terms_4_log_pf[..], max_ep_of_term_4_log_pf);
[INFO] [stderr]     |                                                                                  ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0412]: cannot find type `LogProbMat` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:172:100
[INFO] [stderr]     |
[INFO] [stderr] 172 | fn get_log_base_pairing_prob_mat(seq: SeqSlice, log_ss_ppf_mats: &LogSsPpfMats, seq_len: usize) -> LogProbMat {
[INFO] [stderr]     |                                                                                                    ^^^^^^^^^^ help: a type alias with a similar name exists: `LogProb`
[INFO] [stderr]     | 
[INFO] [stderr]    ::: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/bio-seq-algos-0.1.14/src/utils.rs:10:1
[INFO] [stderr]     |
[INFO] [stderr] 10  | pub type LogProb = Prob;
[INFO] [stderr]     | ------------------------ similarly named type alias `LogProb` defined here
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:205:38
[INFO] [stderr]     |
[INFO] [stderr] 205 |         log_prob_mat_4_mls_1[i][j] = logsumexp(&eps_of_terms_4_log_prob_1[..], max_ep_of_term_4_log_prob_1);
[INFO] [stderr]     |                                      ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:208:38
[INFO] [stderr]     |
[INFO] [stderr] 208 |         log_prob_mat_4_mls_2[i][j] = logsumexp(&eps_of_terms_4_log_prob_2[..], max_ep_of_term_4_log_prob_2);
[INFO] [stderr]     |                                      ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] error[E0425]: cannot find function `logsumexp` in this scope
[INFO] [stderr]    --> src/mccaskill_algo.rs:270:57
[INFO] [stderr]     |
[INFO] [stderr] 270 |         log_bpp_mat[accessible_pp.0][accessible_pp.1] = logsumexp(&eps_of_terms_4_log_prob[..], max_ep_of_term_4_log_prob);
[INFO] [stderr]     |                                                         ^^^^^^^^^ not found in this scope
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/utils.rs:36:1
[INFO] [stderr]     |
[INFO] [stderr] 36  | / lazy_static! {
[INFO] [stderr] 37  | |   static ref CANONICAL_BPS: HashMap<BasePair, bool> = {
[INFO] [stderr] 38  | |     [(AU, true), (CG, true), (GC, true), (GU, true), (UA, true), (UG, true)].iter().cloned().collect()
[INFO] [stderr] 39  | |   };
[INFO] [stderr] ...   |
[INFO] [stderr] 209 | |   };
[INFO] [stderr] 210 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to 23 previous errors
[INFO] [stderr] 
[INFO] [stderr] Some errors have detailed explanations: E0412, E0425, E0433.
[INFO] [stderr] For more information about an error, try `rustc --explain E0412`.
[INFO] [stderr] error: could not compile `rna-algos`.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: aborting due to 23 previous errors
[INFO] [stderr] 
[INFO] [stderr] Some errors have detailed explanations: E0412, E0425, E0433.
[INFO] [stderr] For more information about an error, try `rustc --explain E0412`.
[INFO] [stderr] error: could not compile `rna-algos`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] running `"docker" "inspect" "ca861897f2fb9e69b1d40c48fb4e2d7f614ab52fbdc63212a2ce7dd75844e936"`
[INFO] running `"docker" "rm" "-f" "ca861897f2fb9e69b1d40c48fb4e2d7f614ab52fbdc63212a2ce7dd75844e936"`
[INFO] [stdout] ca861897f2fb9e69b1d40c48fb4e2d7f614ab52fbdc63212a2ce7dd75844e936