[INFO] crate ncbitaxonomy 0.2.2 is already in cache [INFO] checking ncbitaxonomy-0.2.2 against try#e60d9e09c55855f5a848fde8ad83e13131a5b241 for pr-68350 [INFO] extracting crate ncbitaxonomy 0.2.2 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate ncbitaxonomy 0.2.2 on toolchain e60d9e09c55855f5a848fde8ad83e13131a5b241 [INFO] running `"/workspace/cargo-home/bin/cargo" "+e60d9e09c55855f5a848fde8ad83e13131a5b241" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate ncbitaxonomy 0.2.2 [INFO] finished tweaking crates.io crate ncbitaxonomy 0.2.2 [INFO] tweaked toml for crates.io crate ncbitaxonomy 0.2.2 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 0.2.2 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+e60d9e09c55855f5a848fde8ad83e13131a5b241" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+e60d9e09c55855f5a848fde8ad83e13131a5b241" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7c616bd2ebab787debf94b1c1bc932a9e4463ea018f1e4ba7849a93873c782b9 [INFO] running `"docker" "start" "-a" "7c616bd2ebab787debf94b1c1bc932a9e4463ea018f1e4ba7849a93873c782b9"` [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Checking textwrap v0.10.0 [INFO] [stderr] Checking memchr v2.2.1 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Checking rand v0.5.6 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking slice-deque v0.1.16 [INFO] [stderr] Checking atty v0.2.13 [INFO] [stderr] Checking backtrace-sys v0.1.32 [INFO] [stderr] Checking flate2 v1.0.12 [INFO] [stderr] Compiling syn v1.0.7 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking backtrace v0.3.40 [INFO] [stderr] Checking aho-corasick v0.7.6 [INFO] [stderr] Checking csv-core v0.1.6 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking buf_redux v0.7.1 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking error-chain v0.12.1 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking parking_lot v0.6.4 [INFO] [stderr] Checking regex v1.3.1 [INFO] [stderr] Checking crossbeam-channel v0.2.6 [INFO] [stderr] Checking crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.1 [INFO] [stderr] Compiling serde_derive v1.0.102 [INFO] [stderr] Compiling failure_derive v0.1.6 [INFO] [stderr] Checking failure v0.1.6 [INFO] [stderr] Checking indextree v3.3.0 [INFO] [stderr] Checking serde v1.0.102 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking bstr v0.2.8 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking seq_io v0.3.0 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Checking csv v1.1.1 [INFO] [stderr] Checking ncbitaxonomy v0.2.2 (/opt/rustwide/workdir) [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stderr] --> src/lib.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | / error_chain! { [INFO] [stderr] 11 | | foreign_links { [INFO] [stderr] 12 | | Io(::std::io::Error) #[doc = "Io"]; [INFO] [stderr] 13 | | ParseIntError(::std::num::ParseIntError); [INFO] [stderr] ... | [INFO] [stderr] 20 | | } [INFO] [stderr] 21 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bin/taxonomy_filter_fastq.rs:155:60 [INFO] [stderr] | [INFO] [stderr] 155 | let record = result.expect("Error reading record");; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolon)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary trailing semicolon [INFO] [stderr] --> src/bin/taxonomy_filter_fastq.rs:155:60 [INFO] [stderr] | [INFO] [stderr] 155 | let record = result.expect("Error reading record");; [INFO] [stderr] | ^ help: remove this semicolon [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(redundant_semicolon)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 44.61s [INFO] running `"docker" "inspect" "7c616bd2ebab787debf94b1c1bc932a9e4463ea018f1e4ba7849a93873c782b9"` [INFO] running `"docker" "rm" "-f" "7c616bd2ebab787debf94b1c1bc932a9e4463ea018f1e4ba7849a93873c782b9"` [INFO] [stdout] 7c616bd2ebab787debf94b1c1bc932a9e4463ea018f1e4ba7849a93873c782b9