[INFO] crate gb-io 0.5.0 is already in cache [INFO] checking gb-io-0.5.0 against master#fdc0011561c6365c596dfd8fa1ef388162bc89c7 for pr-66504-1 [INFO] extracting crate gb-io 0.5.0 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate gb-io 0.5.0 on toolchain fdc0011561c6365c596dfd8fa1ef388162bc89c7 [INFO] running `"/workspace/cargo-home/bin/cargo" "+fdc0011561c6365c596dfd8fa1ef388162bc89c7" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate gb-io 0.5.0 [INFO] finished tweaking crates.io crate gb-io 0.5.0 [INFO] tweaked toml for crates.io crate gb-io 0.5.0 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+fdc0011561c6365c596dfd8fa1ef388162bc89c7" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+fdc0011561c6365c596dfd8fa1ef388162bc89c7" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+fdc0011561c6365c596dfd8fa1ef388162bc89c7" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 655cc4ae511e53c31a4f1674f1729bafd602582d24144e4d6d1a5ddf4100c7eb [INFO] running `"docker" "start" "-a" "655cc4ae511e53c31a4f1674f1729bafd602582d24144e4d6d1a5ddf4100c7eb"` [INFO] [stderr] Compiling string_cache_shared v0.3.0 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Checking new_debug_unreachable v1.0.3 [INFO] [stderr] Checking precomputed-hash v0.1.1 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking circular v0.2.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking nom v4.2.3 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking env_logger v0.6.2 [INFO] [stderr] Compiling string_cache_codegen v0.4.4 [INFO] [stderr] Checking bstr v0.2.8 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Compiling string_cache v0.7.5 [INFO] [stderr] Compiling gb-io v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking csv v1.1.1 [INFO] [stderr] error: couldn't read src/../tests/mg1655.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:72:21 [INFO] [stderr] | [INFO] [stderr] 72 | let ecoli = include_bytes!("../tests/mg1655.gb"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:88:32 [INFO] [stderr] | [INFO] [stderr] 88 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:95:32 [INFO] [stderr] | [INFO] [stderr] 95 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap().pop().unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: couldn't read src/../tests/biopython_tests/ls_orchid.gb: No such file or directory (os error 2) [INFO] [stderr] --> src/lib.rs:114:25 [INFO] [stderr] | [INFO] [stderr] 114 | parse_slice(include_bytes!("../tests/biopython_tests/ls_orchid.gb")).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:141:28 [INFO] [stderr] | [INFO] [stderr] 141 | External(Location, Box), [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:743:42 [INFO] [stderr] | [INFO] [stderr] 743 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:755:42 [INFO] [stderr] | [INFO] [stderr] 755 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/reader/nom_parsers.rs:841:35 [INFO] [stderr] | [INFO] [stderr] 841 | pub type NomParser = &'static (Fn(&[u8]) -> IResult<&[u8], T> + 'static); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&[u8]) -> IResult<&[u8], T> + 'static` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:141:28 [INFO] [stderr] | [INFO] [stderr] 141 | External(Location, Box), [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:743:42 [INFO] [stderr] | [INFO] [stderr] 743 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/seq.rs:755:42 [INFO] [stderr] | [INFO] [stderr] 755 | F: (FnMut(&str) -> Result>) + 'a, [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/reader/nom_parsers.rs:841:35 [INFO] [stderr] | [INFO] [stderr] 841 | pub type NomParser = &'static (Fn(&[u8]) -> IResult<&[u8], T> + 'static); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&[u8]) -> IResult<&[u8], T> + 'static` [INFO] [stderr] [INFO] [stderr] error: aborting due to 4 previous errors [INFO] [stderr] [INFO] [stderr] error: could not compile `gb-io`. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "655cc4ae511e53c31a4f1674f1729bafd602582d24144e4d6d1a5ddf4100c7eb"` [INFO] running `"docker" "rm" "-f" "655cc4ae511e53c31a4f1674f1729bafd602582d24144e4d6d1a5ddf4100c7eb"` [INFO] [stdout] 655cc4ae511e53c31a4f1674f1729bafd602582d24144e4d6d1a5ddf4100c7eb