[INFO] fetching crate hdf5-rs 0.2.0...
[INFO] checking hdf5-rs-0.2.0 against nightly-2019-10-27 for pr-65897
[INFO] extracting crate hdf5-rs 0.2.0 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate hdf5-rs 0.2.0 on toolchain nightly-2019-10-27
[INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-sys from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency remutex from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0
[INFO] finished tweaking crates.io crate hdf5-rs 0.2.0
[INFO] tweaked toml for crates.io crate hdf5-rs 0.2.0 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2019-10-27" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 980c5870cdf78b854ebfbe884128fd36b835fb8124510d92a866aa95ca93e693
[INFO] running `"docker" "start" "-a" "980c5870cdf78b854ebfbe884128fd36b835fb8124510d92a866aa95ca93e693"`
[INFO] [stderr]    Compiling libhdf5-lib v0.2.0
[INFO] [stderr]     Checking remutex v0.1.1
[INFO] [stderr]    Compiling libhdf5-sys v0.2.0
[INFO] [stderr]    Compiling hdf5-rs v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr] error: linking with `cc` failed: exit code: 1
[INFO] [stderr]   |
[INFO] [stderr]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173.build_script_build.6bdnmbuo-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173.build_script_build.6bdnmbuo-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173.build_script_build.6bdnmbuo-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173.build_script_build.6bdnmbuo-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173.build_script_build.6bdnmbuo-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173" "/opt/rustwide/target/debug/build/libhdf5-sys-01f644d45bdc6173/build_script_build-01f644d45bdc6173.qwc9pstpw9gf8oa.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-46c9bda425aee63c.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-cf5a4c97db182d23.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-321edc7624c872e3.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-3a566c8b14c4ae45.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-88d412bd0a034c5c.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-3b3f37f9bb8874ef.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-6cd1fa181eb771d1.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-d0e2512329d58381.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-c501e660665df89d.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-317d52bf1b16f40c.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-36fbaa3ace245794.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-5068783038d39ce2.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-327fa06fabbc96b8.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-c7661ff75d863bd0.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-b96adf72f322eaa5.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-lutil"
[INFO] [stderr]   = note: /usr/bin/ld: cannot find -lhdf5
[INFO] [stderr]           collect2: error: ld returned 1 exit status
[INFO] [stderr]           
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to previous error
[INFO] [stderr] 
[INFO] [stderr] error: could not compile `libhdf5-sys`.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: linking with `cc` failed: exit code: 1
[INFO] [stderr]   |
[INFO] [stderr]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b.build_script_build.6bx4ev8v-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b.build_script_build.6bx4ev8v-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b.build_script_build.6bx4ev8v-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b.build_script_build.6bx4ev8v-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b.build_script_build.6bx4ev8v-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b" "/opt/rustwide/target/debug/build/hdf5-rs-21e2bf32c4b10e6b/build_script_build-21e2bf32c4b10e6b.1zkrzonvr724bm7j.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-46c9bda425aee63c.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-cf5a4c97db182d23.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-321edc7624c872e3.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-3a566c8b14c4ae45.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-88d412bd0a034c5c.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-3b3f37f9bb8874ef.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-6cd1fa181eb771d1.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-d0e2512329d58381.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-c501e660665df89d.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-317d52bf1b16f40c.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-36fbaa3ace245794.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-5068783038d39ce2.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-327fa06fabbc96b8.rlib" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-c7661ff75d863bd0.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/nightly-2019-10-27-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-b96adf72f322eaa5.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-lutil"
[INFO] [stderr]   = note: /usr/bin/ld: cannot find -lhdf5
[INFO] [stderr]           collect2: error: ld returned 1 exit status
[INFO] [stderr]           
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to previous error
[INFO] [stderr] 
[INFO] [stderr] error: could not compile `hdf5-rs`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] running `"docker" "inspect" "980c5870cdf78b854ebfbe884128fd36b835fb8124510d92a866aa95ca93e693"`
[INFO] running `"docker" "rm" "-f" "980c5870cdf78b854ebfbe884128fd36b835fb8124510d92a866aa95ca93e693"`
[INFO] [stdout] 980c5870cdf78b854ebfbe884128fd36b835fb8124510d92a866aa95ca93e693