[INFO] crate chemfiles-sys 0.9.1 is already in cache [INFO] checking chemfiles-sys-0.9.1 against nightly-2019-10-27 for pr-65897 [INFO] extracting crate chemfiles-sys 0.9.1 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate chemfiles-sys 0.9.1 on toolchain nightly-2019-10-27 [INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate chemfiles-sys 0.9.1 [INFO] finished tweaking crates.io crate chemfiles-sys 0.9.1 [INFO] tweaked toml for crates.io crate chemfiles-sys 0.9.1 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2019-10-27" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 77f34026db6bba966772e035ccc88886f07080cd590d8c3680737ad02a593c3d [INFO] running `"docker" "start" "-a" "77f34026db6bba966772e035ccc88886f07080cd590d8c3680737ad02a593c3d"` [INFO] [stderr] Compiling chemfiles-sys v0.9.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-5306bde1e481294f/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-d28c326046f2d700/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 7.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 7.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-d28c326046f2d700/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/posix.cc.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.o [INFO] [stderr] [ 3%] Building C object 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failed [INFO] [stderr] Makefile:129: recipe for target 'all' failed [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 4 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 4 [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o] Error 4 [INFO] [stderr] make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5601d1adb3a4 - backtrace::backtrace::libunwind::trace::h76d91e1eb79fb53e [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x5601d1adb3a4 - backtrace::backtrace::trace_unsynchronized::h29863717ec6e653b [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5601d1adb3a4 - std::sys_common::backtrace::_print_fmt::h433c3127c35ab78a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:77 [INFO] [stderr] 3: 0x5601d1adb3a4 - ::fmt::hc2340102ca4babf0 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:61 [INFO] [stderr] 4: 0x5601d1afb28c - core::fmt::write::h5c0dcb2129f8702a [INFO] [stderr] at src/libcore/fmt/mod.rs:1028 [INFO] [stderr] 5: 0x5601d1ad7c87 - std::io::Write::write_fmt::hf4455330f718fff9 [INFO] [stderr] at src/libstd/io/mod.rs:1412 [INFO] [stderr] 6: 0x5601d1addf3e - std::sys_common::backtrace::_print::h6ea70acadcfabf8e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:65 [INFO] [stderr] 7: 0x5601d1addf3e - std::sys_common::backtrace::print::h0f864c06560e856d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:50 [INFO] [stderr] 8: 0x5601d1addf3e - std::panicking::default_hook::{{closure}}::h2e639664c611a0cc [INFO] [stderr] at src/libstd/panicking.rs:188 [INFO] [stderr] 9: 0x5601d1addc41 - std::panicking::default_hook::ha7dbf9b7148ca0a8 [INFO] [stderr] at src/libstd/panicking.rs:205 [INFO] [stderr] 10: 0x5601d1ade5d5 - std::panicking::rust_panic_with_hook::h0adc728365f4bf0e [INFO] [stderr] at src/libstd/panicking.rs:468 [INFO] [stderr] 11: 0x5601d1ade172 - std::panicking::continue_panic_fmt::h23c4a3556afe2980 [INFO] [stderr] at src/libstd/panicking.rs:375 [INFO] [stderr] 12: 0x5601d1ade0cc - std::panicking::begin_panic_fmt::h21029d1880a015a4 [INFO] [stderr] at src/libstd/panicking.rs:330 [INFO] [stderr] 13: 0x5601d1a6a246 - cmake::fail::ha74b80fc8757d4aa [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 14: 0x5601d1a69bca - cmake::run::h9cac42bfa773ad0c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 15: 0x5601d1a6630b - cmake::Config::build::h7d8b47944c8d86d4 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:745 [INFO] [stderr] 16: 0x5601d1a61bdf - build_script_build::build_chemfiles::h031f5073f8dc250b [INFO] [stderr] at /opt/rustwide/workdir/build.rs:18 [INFO] [stderr] 17: 0x5601d1a619fe - build_script_build::main::h4880df58ba8d7bda [INFO] [stderr] at /opt/rustwide/workdir/build.rs:8 [INFO] [stderr] 18: 0x5601d1a628d0 - std::rt::lang_start::{{closure}}::h845a4a2dd428799c [INFO] [stderr] at /rustc/fae75cd216c481de048e4951697c8f8525669c65/src/libstd/rt.rs:61 [INFO] [stderr] 19: 0x5601d1ade003 - std::rt::lang_start_internal::{{closure}}::h36226ace461817a7 [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 20: 0x5601d1ade003 - std::panicking::try::do_call::h2024220f599d8d5a [INFO] [stderr] at src/libstd/panicking.rs:287 [INFO] [stderr] 21: 0x5601d1ae54aa - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:83 [INFO] [stderr] 22: 0x5601d1adeacd - std::panicking::try::h0ace469a320dfd50 [INFO] [stderr] at src/libstd/panicking.rs:265 [INFO] [stderr] 23: 0x5601d1adeacd - std::panic::catch_unwind::h85f3b2a6adb142d8 [INFO] [stderr] at src/libstd/panic.rs:396 [INFO] [stderr] 24: 0x5601d1adeacd - std::rt::lang_start_internal::h241a3a2e0acdf39c [INFO] [stderr] at src/libstd/rt.rs:47 [INFO] [stderr] 25: 0x5601d1a628a9 - std::rt::lang_start::h0efabe0d72c728fa [INFO] [stderr] at /rustc/fae75cd216c481de048e4951697c8f8525669c65/src/libstd/rt.rs:61 [INFO] [stderr] 26: 0x5601d1a6251a - main [INFO] [stderr] 27: 0x7fabb167ab97 - __libc_start_main [INFO] [stderr] 28: 0x5601d1a6076a - _start [INFO] [stderr] 29: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "77f34026db6bba966772e035ccc88886f07080cd590d8c3680737ad02a593c3d"` [INFO] running `"docker" "rm" "-f" "77f34026db6bba966772e035ccc88886f07080cd590d8c3680737ad02a593c3d"` [INFO] [stdout] 77f34026db6bba966772e035ccc88886f07080cd590d8c3680737ad02a593c3d