[INFO] updating cached repository https://github.com/rhysnewell/Kallisto_Indexer
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] fb2da531c4e51b75f98c9782bc949a5d3d711a18
[INFO] checking rhysnewell/Kallisto_Indexer against nightly-2019-10-27 for pr-65897
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frhysnewell%2FKallisto_Indexer" "/workspace/builds/worker-3/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/rhysnewell/Kallisto_Indexer on toolchain nightly-2019-10-27
[INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] finished tweaking git repo https://github.com/rhysnewell/Kallisto_Indexer
[INFO] tweaked toml for git repo https://github.com/rhysnewell/Kallisto_Indexer written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/rhysnewell/Kallisto_Indexer already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+nightly-2019-10-27" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+nightly-2019-10-27" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 0f56c84317f8165880993db5721031f2f3de169ea38bceb72f45cab665e3e648
[INFO] running `"docker" "start" "-a" "0f56c84317f8165880993db5721031f2f3de169ea38bceb72f45cab665e3e648"`
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling filetime v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling libz-sys v1.0.23
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking nix v0.11.0
[INFO] [stderr]    Compiling memchr v2.1.0
[INFO] [stderr]     Checking itertools-num v0.1.2
[INFO] [stderr]     Checking csv-core v0.1.4
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]     Checking serde v1.0.79
[INFO] [stderr]     Checking env_logger v0.4.3
[INFO] [stderr]    Compiling lzma-sys v0.1.10
[INFO] [stderr]    Compiling aho-corasick v0.6.8
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling regex v1.0.5
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking csv v1.0.2
[INFO] [stderr]     Checking bio-types v0.3.0
[INFO] [stderr]     Checking serde_json v1.0.31
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]     Checking assert_cli v0.6.3
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib#1f9736ef)
[INFO] [stderr]     Checking kmer_indexer v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] error[E0599]: no method named `genome_of_contig` found for type `genomes_and_contigs::GenomesAndContigs` in the current scope
[INFO] [stderr]    --> src/lib.rs:303:32
[INFO] [stderr]     |
[INFO] [stderr] 303 |             *(contig_to_genome.genome_of_contig(&String::from("contig1")).unwrap()));
[INFO] [stderr]     |                                ^^^^^^^^^^^^^^^^ method not found in `genomes_and_contigs::GenomesAndContigs`
[INFO] [stderr]     | 
[INFO] [stderr]    ::: src/genomes_and_contigs.rs:8:1
[INFO] [stderr]     |
[INFO] [stderr] 8   | pub struct GenomesAndContigs {
[INFO] [stderr]     | ---------------------------- method `genome_of_contig` not found for this
[INFO] [stderr] 
[INFO] [stderr] error[E0599]: no method named `genome_of_contig` found for type `genomes_and_contigs::GenomesAndContigs` in the current scope
[INFO] [stderr]    --> src/lib.rs:309:63
[INFO] [stderr]     |
[INFO] [stderr] 309 |         assert_eq!(String::from("genome1"), *contig_to_genome.genome_of_contig(&String::from("seq1")).unwrap());
[INFO] [stderr]     |                                                               ^^^^^^^^^^^^^^^^ method not found in `genomes_and_contigs::GenomesAndContigs`
[INFO] [stderr]     | 
[INFO] [stderr]    ::: src/genomes_and_contigs.rs:8:1
[INFO] [stderr]     |
[INFO] [stderr] 8   | pub struct GenomesAndContigs {
[INFO] [stderr]     | ---------------------------- method `genome_of_contig` not found for this
[INFO] [stderr] 
[INFO] [stderr] error[E0599]: no method named `genome_of_contig` found for type `genomes_and_contigs::GenomesAndContigs` in the current scope
[INFO] [stderr]    --> src/lib.rs:310:63
[INFO] [stderr]     |
[INFO] [stderr] 310 |         assert_eq!(String::from("genome1"), *contig_to_genome.genome_of_contig(&String::from("seq2")).unwrap());
[INFO] [stderr]     |                                                               ^^^^^^^^^^^^^^^^ method not found in `genomes_and_contigs::GenomesAndContigs`
[INFO] [stderr]     | 
[INFO] [stderr]    ::: src/genomes_and_contigs.rs:8:1
[INFO] [stderr]     |
[INFO] [stderr] 8   | pub struct GenomesAndContigs {
[INFO] [stderr]     | ---------------------------- method `genome_of_contig` not found for this
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to 3 previous errors
[INFO] [stderr] 
[INFO] [stderr] For more information about this error, try `rustc --explain E0599`.
[INFO] [stderr] error: could not compile `kmer_indexer`.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "0f56c84317f8165880993db5721031f2f3de169ea38bceb72f45cab665e3e648"`
[INFO] running `"docker" "rm" "-f" "0f56c84317f8165880993db5721031f2f3de169ea38bceb72f45cab665e3e648"`
[INFO] [stdout] 0f56c84317f8165880993db5721031f2f3de169ea38bceb72f45cab665e3e648