[INFO] updating cached repository https://github.com/Helkafen/vcf_pwm [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 5cf14e4160c073f16165d2d11edfc734787c89e9 [INFO] checking Helkafen/vcf_pwm against beta-2019-10-27 for pr-65897 [INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHelkafen%2Fvcf_pwm" "/workspace/builds/worker-2/source"` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Helkafen/vcf_pwm on toolchain beta-2019-10-27 [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2019-10-27" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/Helkafen/vcf_pwm [INFO] finished tweaking git repo https://github.com/Helkafen/vcf_pwm [INFO] tweaked toml for git repo https://github.com/Helkafen/vcf_pwm written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/Helkafen/vcf_pwm already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+beta-2019-10-27" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2019-10-27" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 47931f9e4b8605b78e94fc3c87db3bbfb1e78c07e3b50b1216b314b6abd09072 [INFO] running `"docker" "start" "-a" "47931f9e4b8605b78e94fc3c87db3bbfb1e78c07e3b50b1216b314b6abd09072"` [INFO] [stderr] Compiling libc v0.2.59 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling bindgen v0.50.0 [INFO] [stderr] Compiling bio v0.28.2 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling regex-syntax v0.6.8 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking rand_xoshiro v0.1.0 [INFO] [stderr] Checking criterion-plot v0.3.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking crossbeam-deque v0.7.1 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling backtrace-sys v0.1.30 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling backtrace v0.3.32 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking serde_json v1.0.40 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bv v0.10.0 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking num_cpus v1.10.1 [INFO] [stderr] Checking miniz-sys v0.1.12 [INFO] [stderr] Checking libz-sys v1.0.25 [INFO] [stderr] Checking subprocess v0.1.18 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Compiling aho-corasick v0.7.4 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Checking bstr v0.2.1 [INFO] [stderr] Checking csv-core v0.1.6 [INFO] [stderr] Checking tinytemplate v1.0.2 [INFO] [stderr] Checking rayon-core v1.6.0 [INFO] [stderr] Checking flate2 v1.0.9 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling regex v1.1.9 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Checking csv v1.1.1 [INFO] [stderr] Checking rayon v1.2.0 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking bgzip v0.0.3 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking criterion v0.2.11 [INFO] [stderr] Compiling rust-htslib v0.24.0 [INFO] [stderr] error[E0277]: `htslib::htsFile__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:1040:5 [INFO] [stderr] | [INFO] [stderr] 1040 | pub fp: htsFile__bindgen_ty_1, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::htsFile__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::htsFile__bindgen_ty_1` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::htsFile__bindgen_ty_1` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error[E0277]: `htslib::hts_opt__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:1359:5 [INFO] [stderr] | [INFO] [stderr] 1359 | pub val: hts_opt__bindgen_ty_1, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::hts_opt__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::hts_opt__bindgen_ty_1` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::hts_opt__bindgen_ty_1` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error[E0277]: `htslib::__pthread_cond_s__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:3443:5 [INFO] [stderr] | [INFO] [stderr] 3443 | pub __bindgen_anon_1: __pthread_cond_s__bindgen_ty_1, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::__pthread_cond_s__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::__pthread_cond_s__bindgen_ty_1` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::__pthread_cond_s__bindgen_ty_1` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error[E0277]: `htslib::__pthread_cond_s__bindgen_ty_2` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:3444:5 [INFO] [stderr] | [INFO] [stderr] 3444 | pub __bindgen_anon_2: __pthread_cond_s__bindgen_ty_2, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::__pthread_cond_s__bindgen_ty_2` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::__pthread_cond_s__bindgen_ty_2` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::__pthread_cond_s__bindgen_ty_2` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error[E0277]: `htslib::__mbstate_t__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:5053:5 [INFO] [stderr] | [INFO] [stderr] 5053 | pub __value: __mbstate_t__bindgen_ty_1, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::__mbstate_t__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::__mbstate_t__bindgen_ty_1` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::__mbstate_t__bindgen_ty_1` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error[E0277]: `htslib::bcf_info_t__bindgen_ty_1` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:6794:5 [INFO] [stderr] | [INFO] [stderr] 6794 | pub v1: bcf_info_t__bindgen_ty_1, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `htslib::bcf_info_t__bindgen_ty_1` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::bcf_info_t__bindgen_ty_1` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::bcf_info_t__bindgen_ty_1` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error[E0277]: `htslib::bam_pileup_cd` doesn't implement `std::fmt::Debug` [INFO] [stderr] --> /opt/rustwide/target/debug/build/rust-htslib-3102e887cfa4aa35/out/bindings.rs:8472:5 [INFO] [stderr] | [INFO] [stderr] 8472 | pub cd: bam_pileup_cd, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ `htslib::bam_pileup_cd` cannot be formatted using `{:?}` [INFO] [stderr] | [INFO] [stderr] = help: the trait `std::fmt::Debug` is not implemented for `htslib::bam_pileup_cd` [INFO] [stderr] = note: add `#[derive(Debug)]` or manually implement `std::fmt::Debug` [INFO] [stderr] = note: required because of the requirements on the impl of `std::fmt::Debug` for `&htslib::bam_pileup_cd` [INFO] [stderr] = note: required for the cast to the object type `dyn std::fmt::Debug` [INFO] [stderr] [INFO] [stderr] error: aborting due to 7 previous errors [INFO] [stderr] [INFO] [stderr] For more information about this error, try `rustc --explain E0277`. [INFO] [stderr] error: could not compile `rust-htslib`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `"docker" "inspect" "47931f9e4b8605b78e94fc3c87db3bbfb1e78c07e3b50b1216b314b6abd09072"` [INFO] running `"docker" "rm" "-f" "47931f9e4b8605b78e94fc3c87db3bbfb1e78c07e3b50b1216b314b6abd09072"` [INFO] [stdout] 47931f9e4b8605b78e94fc3c87db3bbfb1e78c07e3b50b1216b314b6abd09072