[INFO] cloning repository https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/joel-simon/threaded_fastaq_ngrams" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7641d92a28637de9ef43de48eee048f0e4863994 [INFO] checking joel-simon/threaded_fastaq_ngrams against master#3aedcf06b73fc36feeebca3d579e1d2a6c40acc5 for pr-65819 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/joel-simon/threaded_fastaq_ngrams on toolchain 3aedcf06b73fc36feeebca3d579e1d2a6c40acc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] finished tweaking git repo https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] tweaked toml for git repo https://github.com/joel-simon/threaded_fastaq_ngrams written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/joel-simon/threaded_fastaq_ngrams already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 526dc3e1f4a8e0190f4971d5381d821bc91584cf38ac4527f928a168deea4bd3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "526dc3e1f4a8e0190f4971d5381d821bc91584cf38ac4527f928a168deea4bd3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "526dc3e1f4a8e0190f4971d5381d821bc91584cf38ac4527f928a168deea4bd3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "526dc3e1f4a8e0190f4971d5381d821bc91584cf38ac4527f928a168deea4bd3", kill_on_drop: false }` [INFO] [stdout] 526dc3e1f4a8e0190f4971d5381d821bc91584cf38ac4527f928a168deea4bd3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5fd5bd5cb98a4908ad589e11fa191b8b7335c7c64f3d4ba5e0faf1c20f705725 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5fd5bd5cb98a4908ad589e11fa191b8b7335c7c64f3d4ba5e0faf1c20f705725", kill_on_drop: false }` [INFO] [stderr] Checking concurrent_ngrams v0.0.1 (/opt/rustwide/workdir) [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:8:10 [INFO] [stdout] | [INFO] [stdout] 8 | use std::old_io::File; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:10:10 [INFO] [stdout] | [INFO] [stdout] 10 | use std::old_io::BufferedReader; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path` [INFO] [stdout] --> src/main.rs:45:14 [INFO] [stdout] | [INFO] [stdout] 45 | let path = Path::new("/Users/joelsimon/Documents/Immufind/SequenceAnalysis/data/HD3_IgG1sorted_S1_L001_I1_001.fastq".to_string()); [INFO] [stdout] | ^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 4 | use std::path::Path; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SyncSender` [INFO] [stdout] --> src/main.rs:5:23 [INFO] [stdout] | [INFO] [stdout] 5 | use std::sync::mpsc::{SyncSender, Sender, Receiver, channel}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::os` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::os; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/main.rs:18:26 [INFO] [stdout] | [INFO] [stdout] 18 | let channels: Vec<_> = ((0..num_threads).map(|i| { [INFO] [stdout] | __________________________^ [INFO] [stdout] 19 | | let (tx, rx): (Sender>, Receiver>) = channel(); [INFO] [stdout] 20 | | Arc::new((Mutex::new(tx), Mutex::new(rx))) [INFO] [stdout] 21 | | }).collect()); [INFO] [stdout] | |_______________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 18 | let channels: Vec<_> = (0..num_threads).map(|i| { [INFO] [stdout] 19 | let (tx, rx): (Sender>, Receiver>) = channel(); [INFO] [stdout] 20 | Arc::new((Mutex::new(tx), Mutex::new(rx))) [INFO] [stdout] 21 | }).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:8:10 [INFO] [stdout] | [INFO] [stdout] 8 | use std::old_io::File; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:10:10 [INFO] [stdout] | [INFO] [stdout] 10 | use std::old_io::BufferedReader; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path` [INFO] [stdout] --> src/main.rs:45:14 [INFO] [stdout] | [INFO] [stdout] 45 | let path = Path::new("/Users/joelsimon/Documents/Immufind/SequenceAnalysis/data/HD3_IgG1sorted_S1_L001_I1_001.fastq".to_string()); [INFO] [stdout] | ^^^^ not found in this scope [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 4 | use std::path::Path; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SyncSender` [INFO] [stdout] --> src/main.rs:5:23 [INFO] [stdout] | [INFO] [stdout] 5 | use std::sync::mpsc::{SyncSender, Sender, Receiver, channel}; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::os` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::os; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/main.rs:18:26 [INFO] [stdout] | [INFO] [stdout] 18 | let channels: Vec<_> = ((0..num_threads).map(|i| { [INFO] [stdout] | __________________________^ [INFO] [stdout] 19 | | let (tx, rx): (Sender>, Receiver>) = channel(); [INFO] [stdout] 20 | | Arc::new((Mutex::new(tx), Mutex::new(rx))) [INFO] [stdout] 21 | | }).collect()); [INFO] [stdout] | |_______________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 18 | let channels: Vec<_> = (0..num_threads).map(|i| { [INFO] [stdout] 19 | let (tx, rx): (Sender>, Receiver>) = channel(); [INFO] [stdout] 20 | Arc::new((Mutex::new(tx), Mutex::new(rx))) [INFO] [stdout] 21 | }).collect(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no function or associated item named `spawn` found for struct `Thread` in the current scope [INFO] [stdout] --> src/main.rs:27:13 [INFO] [stdout] | [INFO] [stdout] 27 | Thread::spawn(move || { [INFO] [stdout] | ^^^^^ function or associated item not found in `Thread` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 4 previous errors; 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stderr] error: could not compile `concurrent_ngrams` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0599]: no function or associated item named `spawn` found for struct `Thread` in the current scope [INFO] [stdout] --> src/main.rs:27:13 [INFO] [stdout] | [INFO] [stdout] 27 | Thread::spawn(move || { [INFO] [stdout] | ^^^^^ function or associated item not found in `Thread` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 4 previous errors; 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0599. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "5fd5bd5cb98a4908ad589e11fa191b8b7335c7c64f3d4ba5e0faf1c20f705725", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5fd5bd5cb98a4908ad589e11fa191b8b7335c7c64f3d4ba5e0faf1c20f705725", kill_on_drop: false }` [INFO] [stdout] 5fd5bd5cb98a4908ad589e11fa191b8b7335c7c64f3d4ba5e0faf1c20f705725