[INFO] cloning repository https://github.com/jguhlin/split-into-kmers [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/jguhlin/split-into-kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjguhlin%2Fsplit-into-kmers", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjguhlin%2Fsplit-into-kmers'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c0558b7d88422fec461d7fdfeef45f44316ad19b [INFO] checking jguhlin/split-into-kmers against master#3aedcf06b73fc36feeebca3d579e1d2a6c40acc5 for pr-65819 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjguhlin%2Fsplit-into-kmers" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/jguhlin/split-into-kmers on toolchain 3aedcf06b73fc36feeebca3d579e1d2a6c40acc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/jguhlin/split-into-kmers [INFO] finished tweaking git repo https://github.com/jguhlin/split-into-kmers [INFO] tweaked toml for git repo https://github.com/jguhlin/split-into-kmers written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/jguhlin/split-into-kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0fd1f6884c7fa436b80a19efb2b3be29deb05765895ac18dd4115652b0de94e2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0fd1f6884c7fa436b80a19efb2b3be29deb05765895ac18dd4115652b0de94e2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0fd1f6884c7fa436b80a19efb2b3be29deb05765895ac18dd4115652b0de94e2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0fd1f6884c7fa436b80a19efb2b3be29deb05765895ac18dd4115652b0de94e2", kill_on_drop: false }` [INFO] [stdout] 0fd1f6884c7fa436b80a19efb2b3be29deb05765895ac18dd4115652b0de94e2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c46a2d1a26fb48b37929c74ca49dd9409f2375a0a3bdb8fe07617f3ffccaa889" "/opt/rustwide/cargo-home/bin/cargo" "+3aedcf06b73fc36feeebca3d579e1d2a6c40acc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ca342d1bdc35d5c5031c290918597f4687f03f32770cdb84c4c10b05f1b49e73 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ca342d1bdc35d5c5031c290918597f4687f03f32770cdb84c4c10b05f1b49e73", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Checking cfg-if v0.1.9 [INFO] [stderr] Checking ucd-util v0.1.5 [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling bitflags v1.1.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Checking utf8-ranges v1.0.3 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Compiling parking_lot_core v0.6.2 [INFO] [stderr] Compiling parking_lot v0.9.0 [INFO] [stderr] Checking atty v0.2.13 [INFO] [stderr] Checking clicolors-control v1.0.0 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking regex-syntax v0.6.10 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking aho-corasick v0.7.4 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Checking flate2 v1.0.9 [INFO] [stderr] Checking regex v1.2.0 [INFO] [stderr] Checking console v0.7.7 [INFO] [stderr] Checking indicatif v0.11.0 [INFO] [stderr] Checking split-into-kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | output_writer.write(labels.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `labels` in this scope [INFO] [stdout] --> src/main.rs:68:29 [INFO] [stdout] | [INFO] [stdout] 68 | output_writer.write(labels.as_bytes()); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:69:9 [INFO] [stdout] | [INFO] [stdout] 69 | output_writer.write(b" "); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:73:17 [INFO] [stdout] | [INFO] [stdout] 73 | output_writer.write(kmerx.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:74:17 [INFO] [stdout] | [INFO] [stdout] 74 | output_writer.write(b" "); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:77:9 [INFO] [stdout] | [INFO] [stdout] 77 | output_writer.write(b"\n"); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::env` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::env; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:29:40 [INFO] [stdout] | [INFO] [stdout] 29 | let output: std::io::BufWriter> = match matches.value_of("output") { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:60:20 [INFO] [stdout] | [INFO] [stdout] 60 | let fasta: Box = match filename.ends_with("gz") { [INFO] [stdout] | ^^^^ help: use `dyn`: `dyn Read` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 6 previous errors; 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0425`. [INFO] [stdout] [INFO] [stderr] error: could not compile `split-into-kmers` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:68:9 [INFO] [stdout] | [INFO] [stdout] 68 | output_writer.write(labels.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `labels` in this scope [INFO] [stdout] --> src/main.rs:68:29 [INFO] [stdout] | [INFO] [stdout] 68 | output_writer.write(labels.as_bytes()); [INFO] [stdout] | ^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:69:9 [INFO] [stdout] | [INFO] [stdout] 69 | output_writer.write(b" "); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:73:17 [INFO] [stdout] | [INFO] [stdout] 73 | output_writer.write(kmerx.as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:74:17 [INFO] [stdout] | [INFO] [stdout] 74 | output_writer.write(b" "); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0425]: cannot find value `output_writer` in this scope [INFO] [stdout] --> src/main.rs:77:9 [INFO] [stdout] | [INFO] [stdout] 77 | output_writer.write(b"\n"); [INFO] [stdout] | ^^^^^^^^^^^^^ not found in this scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::env` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use std::env; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:29:40 [INFO] [stdout] | [INFO] [stdout] 29 | let output: std::io::BufWriter> = match matches.value_of("output") { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:60:20 [INFO] [stdout] | [INFO] [stdout] 60 | let fasta: Box = match filename.ends_with("gz") { [INFO] [stdout] | ^^^^ help: use `dyn`: `dyn Read` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 6 previous errors; 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0425`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "ca342d1bdc35d5c5031c290918597f4687f03f32770cdb84c4c10b05f1b49e73", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ca342d1bdc35d5c5031c290918597f4687f03f32770cdb84c4c10b05f1b49e73", kill_on_drop: false }` [INFO] [stdout] ca342d1bdc35d5c5031c290918597f4687f03f32770cdb84c4c10b05f1b49e73