[INFO] updating cached repository https://github.com/guertinlab/seqOutBias [INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/mnt/big/crater/work/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"` [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] a155847862b1ba4f67900e7a5edf527353f718d6 [INFO] checking guertinlab/seqOutBias against try#e689e5eaefe96e6dc3ed5bb629c521b7d207aff7 for pr-64398 [INFO] running `"git" "clone" "work/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "work/builds/worker-4/source"` [INFO] [stderr] Cloning into 'work/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain e689e5eaefe96e6dc3ed5bb629c521b7d207aff7-alt [INFO] running `"/mnt/big/crater/work/cargo-home/bin/cargo" "+e689e5eaefe96e6dc3ed5bb629c521b7d207aff7-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] finished tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to work/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/cargo-home/bin/cargo" "+e689e5eaefe96e6dc3ed5bb629c521b7d207aff7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/mnt/big/crater/work/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/mnt/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+e689e5eaefe96e6dc3ed5bb629c521b7d207aff7-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 5f35324358e02c2d18b109d90ad3f93eeec87943e32f3082435fee9b1edae5ef [INFO] running `"docker" "start" "-a" "5f35324358e02c2d18b109d90ad3f93eeec87943e32f3082435fee9b1edae5ef"` [INFO] [stderr] Compiling escargot v0.2.0 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Checking ieee754 v0.2.2 [INFO] [stderr] Checking bincode v0.5.9 [INFO] [stderr] Compiling seqOutBias v1.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking idna v0.1.2 [INFO] [stderr] Checking miniz-sys v0.1.9 [INFO] [stderr] Compiling syn v0.15.20 [INFO] [stderr] Checking flate2 v0.2.18 [INFO] [stderr] Checking predicates v0.5.2 [INFO] [stderr] Checking docopt v0.6.86 [INFO] [stderr] Checking url v1.5.1 [INFO] [stderr] warning[E0713]: borrow may still be in use when destructor runs [INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/url-1.5.1/src/form_urlencoded.rs:251:40 [INFO] [stderr] | [INFO] [stderr] 249 | impl<'a> Target for ::UrlQuery<'a> { [INFO] [stderr] | -- lifetime `'a` defined here [INFO] [stderr] 250 | fn as_mut_string(&mut self) -> &mut String { &mut self.url.serialization } [INFO] [stderr] 251 | fn finish(self) -> &'a mut ::Url { self.url } [INFO] [stderr] | ^^^^^^^^ - here, drop of `self` needs exclusive access to `*self.url`, because the type `UrlQuery<'_>` implements the `Drop` trait [INFO] [stderr] | | [INFO] [stderr] | returning this value requires that `*self.url` is borrowed for `'a` [INFO] [stderr] | [INFO] [stderr] = warning: this error has been downgraded to a warning for backwards compatibility with previous releases [INFO] [stderr] = warning: this represents potential undefined behavior in your code and this warning will become a hard error in the future [INFO] [stderr] = note: for more information, try `rustc --explain E0729` [INFO] [stderr] [INFO] [stderr] Compiling serde_derive v1.0.80 [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/tallyread.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | try!(result.read_sequence_data()); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/tallyread.rs:106:40 [INFO] [stderr] | [INFO] [stderr] 106 | let (seq, pos, is_minus) = try!(parse_line(&self.line)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/tallyread.rs:141:9 [INFO] [stderr] | [INFO] [stderr] 141 | try!(self.read_sequence_data()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:47:9 [INFO] [stderr] | [INFO] [stderr] 47 | try!(writer.write_u8(super::TBL_VERSION)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:49:9 [INFO] [stderr] | [INFO] [stderr] 49 | try!(writer.write_u8(params.kmer_length)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:50:9 [INFO] [stderr] | [INFO] [stderr] 50 | try!(writer.write_u8(params.unmasked_count)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:52:9 [INFO] [stderr] | [INFO] [stderr] 52 | try!(writer.write_u8(params.plus_offset)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:53:9 [INFO] [stderr] | [INFO] [stderr] 53 | try!(writer.write_u8(params.minus_offset)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:54:9 [INFO] [stderr] | [INFO] [stderr] 54 | try!(writer.write_u16::(params.read_length)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:59:21 [INFO] [stderr] | [INFO] [stderr] 59 | try!(writer.write_u8(1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:61:21 [INFO] [stderr] | [INFO] [stderr] 61 | try!(writer.write_u8(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:67:9 [INFO] [stderr] | [INFO] [stderr] 67 | try!(writer.write_u32::(blen)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:70:9 [INFO] [stderr] | [INFO] [stderr] 70 | try!(writer.write_u64::(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:72:9 [INFO] [stderr] | [INFO] [stderr] 72 | try!(writer.write_u64::(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | try!(writer.write_u64::(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:168:9 [INFO] [stderr] | [INFO] [stderr] 168 | try!(self.writer.write(&self.output[0..(total as usize)])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:37:9 [INFO] [stderr] | [INFO] [stderr] 37 | try!(reader.seek(SeekFrom::Start(0))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:39:23 [INFO] [stderr] | [INFO] [stderr] 39 | let version = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:44:18 [INFO] [stderr] | [INFO] [stderr] 44 | let cl = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:45:18 [INFO] [stderr] | [INFO] [stderr] 45 | let uc = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:46:18 [INFO] [stderr] | [INFO] [stderr] 46 | let po = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:47:18 [INFO] [stderr] | [INFO] [stderr] 47 | let mo = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:48:18 [INFO] [stderr] | [INFO] [stderr] 48 | let rl = try!(reader.read_u16::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:53:28 [INFO] [stderr] | [INFO] [stderr] 53 | let flag = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:71:20 [INFO] [stderr] | [INFO] [stderr] 71 | let blen = try!(reader.read_u32::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:73:22 [INFO] [stderr] | [INFO] [stderr] 73 | let offset = try!(reader.read_u64::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:75:23 [INFO] [stderr] | [INFO] [stderr] 75 | let bufsize = try!(reader.read_u64::()) as usize; [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:77:29 [INFO] [stderr] | [INFO] [stderr] 77 | let counts_offset = try!(reader.read_u64::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:82:9 [INFO] [stderr] | [INFO] [stderr] 82 | try!(reader.seek(SeekFrom::Start(offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:102:25 [INFO] [stderr] | [INFO] [stderr] 102 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:127:21 [INFO] [stderr] | [INFO] [stderr] 127 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:161:9 [INFO] [stderr] | [INFO] [stderr] 161 | try!(self.reader.seek(SeekFrom::Start(self.counts_offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:198:9 [INFO] [stderr] | [INFO] [stderr] 198 | try!(self.reader.seek(SeekFrom::Start(block_info.offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:199:9 [INFO] [stderr] | [INFO] [stderr] 199 | try!(self.reader.read(buf)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:226:31 [INFO] [stderr] | [INFO] [stderr] 226 | let aux = try!(self.read_block(block_info)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/counts.rs:100:16 [INFO] [stderr] | [INFO] [stderr] 100 | let file = try!(File::open(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/counts.rs:111:18 [INFO] [stderr] | [INFO] [stderr] 111 | let line = try!(res); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:22:17 [INFO] [stderr] | [INFO] [stderr] 22 | let mut f = try!(File::create(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:25:9 [INFO] [stderr] | [INFO] [stderr] 25 | try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:33:17 [INFO] [stderr] | [INFO] [stderr] 33 | let mut f = try!(File::create(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:39:9 [INFO] [stderr] | [INFO] [stderr] 39 | try!(write!(f, "variableStep chrom={}\n", chrom)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:45:53 [INFO] [stderr] | [INFO] [stderr] 45 | Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) }, [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:46:54 [INFO] [stderr] | [INFO] [stderr] 46 | Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) }, [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:47:33 [INFO] [stderr] | [INFO] [stderr] 47 | Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)), [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:78:9 [INFO] [stderr] | [INFO] [stderr] 78 | try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:83:9 [INFO] [stderr] | [INFO] [stderr] 83 | try!(write_wiggle(wiggle_name, chroms, counts, strand)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:105:21 [INFO] [stderr] | [INFO] [stderr] 105 | let mut f = try!(File::create(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:115:25 [INFO] [stderr] | [INFO] [stderr] 115 | try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:118:25 [INFO] [stderr] | [INFO] [stderr] 118 | try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:121:21 [INFO] [stderr] | [INFO] [stderr] 121 | try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:151:21 [INFO] [stderr] | [INFO] [stderr] 151 | try!(write_bigwig(&output_minus, &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:157:13 [INFO] [stderr] | [INFO] [stderr] 157 | try!(write_bigwig(OsStr::new(filename), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] Checking serde v1.0.80 [INFO] [stderr] Checking serde_json v1.0.33 [INFO] [stderr] Checking assert_cmd v0.4.0 [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/tallyread.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | try!(result.read_sequence_data()); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/tallyread.rs:106:40 [INFO] [stderr] | [INFO] [stderr] 106 | let (seq, pos, is_minus) = try!(parse_line(&self.line)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/tallyread.rs:141:9 [INFO] [stderr] | [INFO] [stderr] 141 | try!(self.read_sequence_data()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:47:9 [INFO] [stderr] | [INFO] [stderr] 47 | try!(writer.write_u8(super::TBL_VERSION)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:49:9 [INFO] [stderr] | [INFO] [stderr] 49 | try!(writer.write_u8(params.kmer_length)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:50:9 [INFO] [stderr] | [INFO] [stderr] 50 | try!(writer.write_u8(params.unmasked_count)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:52:9 [INFO] [stderr] | [INFO] [stderr] 52 | try!(writer.write_u8(params.plus_offset)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:53:9 [INFO] [stderr] | [INFO] [stderr] 53 | try!(writer.write_u8(params.minus_offset)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:54:9 [INFO] [stderr] | [INFO] [stderr] 54 | try!(writer.write_u16::(params.read_length)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:59:21 [INFO] [stderr] | [INFO] [stderr] 59 | try!(writer.write_u8(1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:61:21 [INFO] [stderr] | [INFO] [stderr] 61 | try!(writer.write_u8(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:67:9 [INFO] [stderr] | [INFO] [stderr] 67 | try!(writer.write_u32::(blen)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:70:9 [INFO] [stderr] | [INFO] [stderr] 70 | try!(writer.write_u64::(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:72:9 [INFO] [stderr] | [INFO] [stderr] 72 | try!(writer.write_u64::(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | try!(writer.write_u64::(0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/write.rs:168:9 [INFO] [stderr] | [INFO] [stderr] 168 | try!(self.writer.write(&self.output[0..(total as usize)])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:37:9 [INFO] [stderr] | [INFO] [stderr] 37 | try!(reader.seek(SeekFrom::Start(0))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:39:23 [INFO] [stderr] | [INFO] [stderr] 39 | let version = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:44:18 [INFO] [stderr] | [INFO] [stderr] 44 | let cl = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:45:18 [INFO] [stderr] | [INFO] [stderr] 45 | let uc = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:46:18 [INFO] [stderr] | [INFO] [stderr] 46 | let po = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:47:18 [INFO] [stderr] | [INFO] [stderr] 47 | let mo = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:48:18 [INFO] [stderr] | [INFO] [stderr] 48 | let rl = try!(reader.read_u16::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:53:28 [INFO] [stderr] | [INFO] [stderr] 53 | let flag = try!(reader.read_u8()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:71:20 [INFO] [stderr] | [INFO] [stderr] 71 | let blen = try!(reader.read_u32::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:73:22 [INFO] [stderr] | [INFO] [stderr] 73 | let offset = try!(reader.read_u64::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:75:23 [INFO] [stderr] | [INFO] [stderr] 75 | let bufsize = try!(reader.read_u64::()) as usize; [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:77:29 [INFO] [stderr] | [INFO] [stderr] 77 | let counts_offset = try!(reader.read_u64::()); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:82:9 [INFO] [stderr] | [INFO] [stderr] 82 | try!(reader.seek(SeekFrom::Start(offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:102:25 [INFO] [stderr] | [INFO] [stderr] 102 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:127:21 [INFO] [stderr] | [INFO] [stderr] 127 | try!(self.reader.seek(SeekFrom::Start(block.offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:161:9 [INFO] [stderr] | [INFO] [stderr] 161 | try!(self.reader.seek(SeekFrom::Start(self.counts_offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:198:9 [INFO] [stderr] | [INFO] [stderr] 198 | try!(self.reader.seek(SeekFrom::Start(block_info.offset))); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:199:9 [INFO] [stderr] | [INFO] [stderr] 199 | try!(self.reader.read(buf)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/seqtable/read.rs:226:31 [INFO] [stderr] | [INFO] [stderr] 226 | let aux = try!(self.read_block(block_info)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/counts.rs:100:16 [INFO] [stderr] | [INFO] [stderr] 100 | let file = try!(File::open(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/counts.rs:111:18 [INFO] [stderr] | [INFO] [stderr] 111 | let line = try!(res); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:22:17 [INFO] [stderr] | [INFO] [stderr] 22 | let mut f = try!(File::create(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:25:9 [INFO] [stderr] | [INFO] [stderr] 25 | try!(write!(f, "{}\t{}\n", chroms[index], chrom_sizes[index])); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:33:17 [INFO] [stderr] | [INFO] [stderr] 33 | let mut f = try!(File::create(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:39:9 [INFO] [stderr] | [INFO] [stderr] 39 | try!(write!(f, "variableStep chrom={}\n", chrom)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:45:53 [INFO] [stderr] | [INFO] [stderr] 45 | Strand::Plus => if value.0 > 0f64 { try!(write!(f, "{}\t{}\n", pos, value.0)) }, [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:46:54 [INFO] [stderr] | [INFO] [stderr] 46 | Strand::Minus => if value.1 > 0f64 { try!(write!(f, "{}\t{}\n", pos, -value.1)) }, [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:47:33 [INFO] [stderr] | [INFO] [stderr] 47 | Strand::Both => try!(write!(f, "{}\t{}\n", pos, value.0 + value.1)), [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:78:9 [INFO] [stderr] | [INFO] [stderr] 78 | try!(write_chrom_info(chrominfo_name, chroms, chrom_sizes)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/bigwig.rs:83:9 [INFO] [stderr] | [INFO] [stderr] 83 | try!(write_wiggle(wiggle_name, chroms, counts, strand)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:105:21 [INFO] [stderr] | [INFO] [stderr] 105 | let mut f = try!(File::create(filename)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:115:25 [INFO] [stderr] | [INFO] [stderr] 115 | try!(write!(f, "{}\t{}\t{}\t.\t{}\t+\n", chrom, pos, pos + 1, value.0)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:118:25 [INFO] [stderr] | [INFO] [stderr] 118 | try!(write!(f, "{}\t{}\t{}\t.\t{}\t-\n", chrom, pos, pos + 1, -value.1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:121:21 [INFO] [stderr] | [INFO] [stderr] 121 | try!(write!(f, "{}\t{}\t{}\t.\t{}\n", chrom, pos, pos + 1, value.0 + value.1)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:151:21 [INFO] [stderr] | [INFO] [stderr] 151 | try!(write_bigwig(&output_minus, &self.chroms, &self.chrom_sizes, &self.counts, Strand::Minus)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stderr] --> src/scale.rs:157:13 [INFO] [stderr] | [INFO] [stderr] 157 | try!(write_bigwig(OsStr::new(filename), &self.chroms, &self.chrom_sizes, &self.counts, Strand::Both)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 08s [INFO] running `"docker" "inspect" "5f35324358e02c2d18b109d90ad3f93eeec87943e32f3082435fee9b1edae5ef"` [INFO] running `"docker" "rm" "-f" "5f35324358e02c2d18b109d90ad3f93eeec87943e32f3082435fee9b1edae5ef"` [INFO] [stdout] 5f35324358e02c2d18b109d90ad3f93eeec87943e32f3082435fee9b1edae5ef