[INFO] crate rust-bio-tools 0.6.0 is already in cache
[INFO] checking rust-bio-tools-0.6.0 against master#c9edc02e8320a9e5799d185910ece7d491f524e6 for pr-64398
[INFO] extracting crate rust-bio-tools 0.6.0 into work/builds/worker-4/source
[INFO] validating manifest of crates.io crate rust-bio-tools 0.6.0 on toolchain c9edc02e8320a9e5799d185910ece7d491f524e6-alt
[INFO] running `"/mnt/big/crater/work/cargo-home/bin/cargo" "+c9edc02e8320a9e5799d185910ece7d491f524e6-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate rust-bio-tools 0.6.0
[INFO] finished tweaking crates.io crate rust-bio-tools 0.6.0
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.6.0 written to work/builds/worker-4/source/Cargo.toml
[INFO] running `"/mnt/big/crater/work/cargo-home/bin/cargo" "+c9edc02e8320a9e5799d185910ece7d491f524e6-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"/mnt/big/crater/work/cargo-home/bin/cargo" "+c9edc02e8320a9e5799d185910ece7d491f524e6-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/mnt/big/crater/work/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/mnt/big/crater/work/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+c9edc02e8320a9e5799d185910ece7d491f524e6-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 3b197911ed6f3d2dace0f55ab5d55ea30bcb3a42584f300c75c577f049730fa1
[INFO] running `"docker" "start" "-a" "3b197911ed6f3d2dace0f55ab5d55ea30bcb3a42584f300c75c577f049730fa1"`
[INFO] [stderr]    Compiling bio v0.27.0
[INFO] [stderr]     Checking order-stat v0.1.3
[INFO] [stderr]    Compiling GSL v1.1.0
[INFO] [stderr]     Checking number_prefix v0.2.8
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]     Checking console v0.9.0
[INFO] [stderr]     Checking cogset v0.2.0
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]     Checking indicatif v0.11.0
[INFO] [stderr]     Checking flate2 v1.0.11
[INFO] [stderr]    Compiling bindgen v0.49.2
[INFO] [stderr]    Compiling bindgen v0.51.0
[INFO] [stderr]    Compiling rust-htslib v0.24.0
[INFO] [stderr]    Compiling librocksdb-sys v6.1.2
[INFO] [stderr] error: failed to run custom build command for `librocksdb-sys v6.1.2`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/librocksdb-sys-2aa921831848001d/build-script-build` (exit code: 1)
[INFO] [stderr] --- stdout
[INFO] [stderr] cargo:rerun-if-changed=build.rs
[INFO] [stderr] cargo:rerun-if-changed=rocksdb/
[INFO] [stderr] cargo:rerun-if-changed=snappy/
[INFO] [stderr] cargo:rerun-if-changed=lz4/
[INFO] [stderr] cargo:rerun-if-changed=zstd/
[INFO] [stderr] cargo:rerun-if-changed=zlib/
[INFO] [stderr] cargo:rerun-if-changed=bzip2/
[INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr] OPT_LEVEL = Some("0")
[INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None
[INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None
[INFO] [stderr] HOST_CXX = None
[INFO] [stderr] CXX = None
[INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None
[INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None
[INFO] [stderr] HOST_CXXFLAGS = None
[INFO] [stderr] CXXFLAGS = None
[INFO] [stderr] CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr] DEBUG = Some("true")
[INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some("fxsr,mmx,sse,sse2")
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/cache/clock_cache.o" "-c" "rocksdb/cache/clock_cache.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/cache/sharded_cache.o" "-c" "rocksdb/cache/sharded_cache.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/c.o" "-c" "rocksdb/db/c.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/compacted_db_impl.o" "-c" "rocksdb/db/compacted_db_impl.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/cache/lru_cache.o" "-c" "rocksdb/cache/lru_cache.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/builder.o" "-c" "rocksdb/db/builder.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/column_family.o" "-c" "rocksdb/db/column_family.cc"
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/compaction.o" "-c" "rocksdb/db/compaction.cc"
[INFO] [stderr] exit code: 0
[INFO] [stderr] exit code: 0
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/compaction_iterator.o" "-c" "rocksdb/db/compaction_iterator.cc"
[INFO] [stderr] exit code: 0
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/compaction_job.o" "-c" "rocksdb/db/compaction_job.cc"
[INFO] [stderr] cargo:warning=c++: internal compiler error: Killed (program cc1plus)
[INFO] [stderr] cargo:warning=Please submit a full bug report,
[INFO] [stderr] cargo:warning=with preprocessed source if appropriate.
[INFO] [stderr] cargo:warning=See <file:///usr/share/doc/gcc-6/README.Bugs> for instructions.
[INFO] [stderr] exit code: 4
[INFO] [stderr] running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/compaction_picker.o" "-c" "rocksdb/db/compaction_picker.cc"
[INFO] [stderr] cargo:warning=c++: internal compiler error: Killed (program cc1plus)
[INFO] [stderr] cargo:warning=Please submit a full bug report,
[INFO] [stderr] cargo:warning=with preprocessed source if appropriate.
[INFO] [stderr] cargo:warning=See <file:///usr/share/doc/gcc-6/README.Bugs> for instructions.
[INFO] [stderr] exit code: 4
[INFO] [stderr] cargo:warning=c++: internal compiler error: Killed (program cc1plus)
[INFO] [stderr] cargo:warning=Please submit a full bug report,
[INFO] [stderr] cargo:warning=with preprocessed source if appropriate.
[INFO] [stderr] cargo:warning=See <file:///usr/share/doc/gcc-6/README.Bugs> for instructions.
[INFO] [stderr] exit code: 4
[INFO] [stderr] cargo:warning=rocksdb/db/c.cc:4223:1: fatal error: error writing to /tmp/ccLZqhwY.s: Success
[INFO] [stderr] cargo:warning= }  // end extern "C"
[INFO] [stderr] cargo:warning= ^
[INFO] [stderr] cargo:warning=compilation terminated.
[INFO] [stderr] exit code: 1
[INFO] [stderr] exit code: 0
[INFO] [stderr] exit code: 0
[INFO] [stderr] exit code: 0
[INFO] [stderr] exit code: 0
[INFO] [stderr] 
[INFO] [stderr] --- stderr
[INFO] [stderr] rocksdb/include/rocksdb/c.h:45:9: warning: #pragma once in main file [-Wpragma-once-outside-header], err: false
[INFO] [stderr] error: 'rustfmt' is not installed for the toolchain 'c9edc02e8320a9e5799d185910ece7d491f524e6-alt'
[INFO] [stderr] To install, run `rustup component add rustfmt --toolchain c9edc02e8320a9e5799d185910ece7d491f524e6-alt`
[INFO] [stderr] Failed to run rustfmt: Internal rustfmt error (non-fatal, continuing)
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] error occurred: Command "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "rocksdb/include/" "-I" "rocksdb/" "-I" "rocksdb/third-party/gtest-1.7.0/fused-src/" "-I" "snappy/" "-I" "lz4/lib/" "-I" "zstd/lib/" "-I" "zstd/lib/dictBuilder/" "-I" "zlib/" "-I" "bzip2/" "-I" "." "-Wall" "-Wextra" "-msse2" "-msse4.1" "-msse4.2" "-mpclmul" "-std=c++11" "-Wno-unused-parameter" "-DSNAPPY=1" "-DLZ4=1" "-DZSTD=1" "-DZLIB=1" "-DBZIP2=1" "-DNDEBUG=1" "-DHAVE_PCLMUL=1" "-DHAVE_SSE42=1" "-DOS_LINUX=1" "-DROCKSDB_PLATFORM_POSIX=1" "-DROCKSDB_LIB_IO_POSIX=1" "-o" "/opt/rustwide/target/debug/build/librocksdb-sys-5a091f678ea93393/out/rocksdb/db/builder.o" "-c" "rocksdb/db/builder.cc" with args "c++" did not execute successfully (status code exit code: 4).
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "3b197911ed6f3d2dace0f55ab5d55ea30bcb3a42584f300c75c577f049730fa1"`
[INFO] running `"docker" "rm" "-f" "3b197911ed6f3d2dace0f55ab5d55ea30bcb3a42584f300c75c577f049730fa1"`
[INFO] [stdout] 3b197911ed6f3d2dace0f55ab5d55ea30bcb3a42584f300c75c577f049730fa1