[INFO] updating cached repository mal2017/csc [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/mal2017/csc [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/csc" "work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/mal2017/csc"` [INFO] [stderr] Cloning into 'work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/mal2017/csc'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/csc" "work/ex/pr-63565/sources/try#75eff020d0923c035c2fe220db4a0465cd847048/gh/mal2017/csc"` [INFO] [stderr] Cloning into 'work/ex/pr-63565/sources/try#75eff020d0923c035c2fe220db4a0465cd847048/gh/mal2017/csc'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 4520455aaa17b25be16d988fdca80cce940a390a [INFO] sha for GitHub repo mal2017/csc: 4520455aaa17b25be16d988fdca80cce940a390a [INFO] validating manifest of mal2017/csc on toolchain master#c43d03a19f326f4a323569328cc501e86eb6d22e [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c43d03a19f326f4a323569328cc501e86eb6d22e-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of mal2017/csc on toolchain try#75eff020d0923c035c2fe220db4a0465cd847048 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+75eff020d0923c035c2fe220db4a0465cd847048-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing mal2017/csc [INFO] finished frobbing mal2017/csc [INFO] frobbed toml for mal2017/csc written to work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/mal2017/csc/Cargo.toml [INFO] started frobbing mal2017/csc [INFO] finished frobbing mal2017/csc [INFO] frobbed toml for mal2017/csc written to work/ex/pr-63565/sources/try#75eff020d0923c035c2fe220db4a0465cd847048/gh/mal2017/csc/Cargo.toml [INFO] crate mal2017/csc already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c43d03a19f326f4a323569328cc501e86eb6d22e-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+75eff020d0923c035c2fe220db4a0465cd847048-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking mal2017/csc against master#c43d03a19f326f4a323569328cc501e86eb6d22e for pr-63565 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-63565/worker-2/master#c43d03a19f326f4a323569328cc501e86eb6d22e:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/mal2017/csc:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c43d03a19f326f4a323569328cc501e86eb6d22e-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 0ce672409cff6c7cc69b7983c698cbedb72f12a40f8a48eb8fbc8eeab0f85f39 [INFO] running `"docker" "start" "-a" "0ce672409cff6c7cc69b7983c698cbedb72f12a40f8a48eb8fbc8eeab0f85f39"` [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Checking libz-sys v1.0.25 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Checking bio-types v0.4.0 [INFO] [stderr] Checking csv v1.0.7 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking bv v0.10.0 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Checking ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf) [INFO] [stderr] Checking cutsites v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 58s [INFO] running `"docker" "inspect" "0ce672409cff6c7cc69b7983c698cbedb72f12a40f8a48eb8fbc8eeab0f85f39"` [INFO] running `"docker" "rm" "-f" "0ce672409cff6c7cc69b7983c698cbedb72f12a40f8a48eb8fbc8eeab0f85f39"` [INFO] [stdout] 0ce672409cff6c7cc69b7983c698cbedb72f12a40f8a48eb8fbc8eeab0f85f39