[INFO] updating cached repository 10XGenomics/rust-pseudoaligner [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/10XGenomics/rust-pseudoaligner [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/pr-63565/sources/try#75eff020d0923c035c2fe220db4a0465cd847048/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/pr-63565/sources/try#75eff020d0923c035c2fe220db4a0465cd847048/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 1229501709adb389886fde3a90609b12bd3b5055 [INFO] sha for GitHub repo 10XGenomics/rust-pseudoaligner: 1229501709adb389886fde3a90609b12bd3b5055 [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain master#c43d03a19f326f4a323569328cc501e86eb6d22e [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c43d03a19f326f4a323569328cc501e86eb6d22e-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain try#75eff020d0923c035c2fe220db4a0465cd847048 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+75eff020d0923c035c2fe220db4a0465cd847048-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/pr-63565/sources/try#75eff020d0923c035c2fe220db4a0465cd847048/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] crate 10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c43d03a19f326f4a323569328cc501e86eb6d22e-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+75eff020d0923c035c2fe220db4a0465cd847048-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking 10XGenomics/rust-pseudoaligner against master#c43d03a19f326f4a323569328cc501e86eb6d22e for pr-63565 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-63565/worker-0/master#c43d03a19f326f4a323569328cc501e86eb6d22e:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-63565/sources/master#c43d03a19f326f4a323569328cc501e86eb6d22e/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c43d03a19f326f4a323569328cc501e86eb6d22e-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 78b79290631b72ab8945659f56f4313ea5a315d3d36a82db5c169dcd8d61605b [INFO] running `"docker" "start" "-a" "78b79290631b72ab8945659f56f4313ea5a315d3d36a82db5c169dcd8d61605b"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling serde v1.0.78 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Checking byteorder v1.2.6 [INFO] [stderr] Checking spin v0.4.9 [INFO] [stderr] Checking pdqsort v1.0.3 [INFO] [stderr] Checking log v0.4.5 [INFO] [stderr] Checking csv-core v0.1.4 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking itertools-num v0.1.2 [INFO] [stderr] Checking crossbeam-epoch v0.6.0 [INFO] [stderr] Checking num-bigint v0.2.0 [INFO] [stderr] Checking num-iter v0.1.37 [INFO] [stderr] Checking chrono v0.4.6 [INFO] [stderr] Checking ndarray v0.9.1 [INFO] [stderr] Checking ordered-float v0.5.1 [INFO] [stderr] Checking concurrent-hashmap v0.2.2 [INFO] [stderr] Checking flate2 v1.0.2 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking env_logger v0.5.13 [INFO] [stderr] Checking crossbeam-channel v0.2.5 [INFO] [stderr] Checking num-rational v0.2.1 [INFO] [stderr] Checking pretty_env_logger v0.2.3 (https://github.com/k3yavi/pretty-env-logger#57963895) [INFO] [stderr] Checking crossbeam v0.4.1 [INFO] [stderr] Checking num v0.2.0 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking bio-types v0.2.0 [INFO] [stderr] Checking boomphf v0.2.1 (https://github.com/10XGenomics/rust-boomphf#93460338) [INFO] [stderr] Checking serde_json v1.0.27 [INFO] [stderr] Checking csv v1.0.1 [INFO] [stderr] Checking bincode v1.0.1 [INFO] [stderr] Checking docopt v1.0.1 [INFO] [stderr] Checking bio v0.22.0 [INFO] [stderr] Checking debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn#4f12ecdc) [INFO] [stderr] Checking debruijn_mapping v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 08s [INFO] running `"docker" "inspect" "78b79290631b72ab8945659f56f4313ea5a315d3d36a82db5c169dcd8d61605b"` [INFO] running `"docker" "rm" "-f" "78b79290631b72ab8945659f56f4313ea5a315d3d36a82db5c169dcd8d61605b"` [INFO] [stdout] 78b79290631b72ab8945659f56f4313ea5a315d3d36a82db5c169dcd8d61605b