[INFO] crate chemfiles-sys 0.9.1 is already in cache [INFO] extracting crate chemfiles-sys 0.9.1 into work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/reg/chemfiles-sys/0.9.1 [INFO] extracting crate chemfiles-sys 0.9.1 into work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/reg/chemfiles-sys/0.9.1 [INFO] validating manifest of chemfiles-sys-0.9.1 on toolchain master#60960a260f7b5c695fd0717311d72ce62dd4eb43 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of chemfiles-sys-0.9.1 on toolchain try#266783e4e09e4e9d5307c1c8e695659c58bbcac7 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing chemfiles-sys-0.9.1 [INFO] finished frobbing chemfiles-sys-0.9.1 [INFO] frobbed toml for chemfiles-sys-0.9.1 written to work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/reg/chemfiles-sys/0.9.1/Cargo.toml [INFO] started frobbing chemfiles-sys-0.9.1 [INFO] finished frobbing chemfiles-sys-0.9.1 [INFO] frobbed toml for chemfiles-sys-0.9.1 written to work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/reg/chemfiles-sys/0.9.1/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking chemfiles-sys-0.9.1 against try#266783e4e09e4e9d5307c1c8e695659c58bbcac7 for pr-63376 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-63376/worker-1/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/reg/chemfiles-sys/0.9.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 29e6d301312fd7adbf6273335629b7e7871578e0ba023a99d13e7e581ad295db [INFO] running `"docker" "start" "-a" "29e6d301312fd7adbf6273335629b7e7871578e0ba023a99d13e7e581ad295db"` [INFO] [stderr] Compiling chemfiles-sys v0.9.1 (/opt/crater/workdir) [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.1 (/opt/crater/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/crater/target/debug/build/chemfiles-sys-c6f62c280930f2c1/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/crater/workdir/." "-DCMAKE_INSTALL_PREFIX=/opt/crater/target/debug/build/chemfiles-sys-3a145f7e70a67aa8/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 6.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 6.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/crater/target/debug/build/chemfiles-sys-3a145f7e70a67aa8/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.o [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 2%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 2%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] Scanning dependencies of target lzma [INFO] 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std::basic_streambuf::pos_type chemfiles::xzstreambuf::seekpos(std::basic_streambuf::pos_type, std::ios_base::openmode)': [INFO] [stderr] /opt/crater/workdir/chemfiles/src/files/XzFile.cpp:309:75: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] [INFO] [stderr] if (iter.block.compressed_file_offset > std::numeric_limits::max()) { [INFO] [stderr] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/MMTF.cpp.o] Error 4 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:835:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560dbbfc684b - backtrace::backtrace::libunwind::trace::h3a6a6e8afb7ff2de [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x560dbbfc684b - backtrace::backtrace::trace_unsynchronized::h2220292c79f07c05 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x560dbbfc684b - std::sys_common::backtrace::_print::h8ff1c2c5cb3b84f7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stderr] 3: 0x560dbbfc684b - std::sys_common::backtrace::print::h2254c58d69a73304 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stderr] 4: 0x560dbbfc684b - std::panicking::default_hook::{{closure}}::hc21cbd062363cef6 [INFO] [stderr] at src/libstd/panicking.rs:200 [INFO] [stderr] 5: 0x560dbbfc6526 - std::panicking::default_hook::hfea076cda52c2914 [INFO] [stderr] at src/libstd/panicking.rs:214 [INFO] [stderr] 6: 0x560dbbfc6f5d - std::panicking::rust_panic_with_hook::h746830f9f479e849 [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 7: 0x560dbbfc6ae2 - std::panicking::continue_panic_fmt::h37fa2235c2440555 [INFO] [stderr] at src/libstd/panicking.rs:384 [INFO] [stderr] 8: 0x560dbbfc6a2f - std::panicking::begin_panic_fmt::h7ba1c30b52463900 [INFO] [stderr] at src/libstd/panicking.rs:339 [INFO] [stderr] 9: 0x560dbbf46436 - cmake::fail::h9c95e105f4c874e9 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:835 [INFO] [stderr] 10: 0x560dbbf45dba - cmake::run::h3a35401414c5981c [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:813 [INFO] [stderr] 11: 0x560dbbf42502 - cmake::Config::build::h70bb8fc26f906248 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.41/src/lib.rs:722 [INFO] [stderr] 12: 0x560dbbf3dbdf - build_script_build::build_chemfiles::hf1a756b08f69964d [INFO] [stderr] at /opt/crater/workdir/build.rs:18 [INFO] [stderr] 13: 0x560dbbf3d9fe - build_script_build::main::h64f359d8291701ca [INFO] [stderr] at /opt/crater/workdir/build.rs:8 [INFO] [stderr] 14: 0x560dbbf3ecc0 - std::rt::lang_start::{{closure}}::h59474f34a5838331 [INFO] [stderr] at /rustc/266783e4e09e4e9d5307c1c8e695659c58bbcac7/src/libstd/rt.rs:64 [INFO] [stderr] 15: 0x560dbbfc6963 - std::rt::lang_start_internal::{{closure}}::h14c5bec2472d54ad [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] 16: 0x560dbbfc6963 - std::panicking::try::do_call::h88f516924fc6a288 [INFO] [stderr] at src/libstd/panicking.rs:296 [INFO] [stderr] 17: 0x560dbbfcddaa - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:80 [INFO] [stderr] 18: 0x560dbbfc746d - std::panicking::try::ha613ca8bf0a1302a [INFO] [stderr] at src/libstd/panicking.rs:275 [INFO] [stderr] 19: 0x560dbbfc746d - std::panic::catch_unwind::h68d4ca98047bc7c5 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 20: 0x560dbbfc746d - std::rt::lang_start_internal::h600c3ba1b556e68a [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 21: 0x560dbbf3ec99 - std::rt::lang_start::hc92ab0ff3cb7e771 [INFO] [stderr] at /rustc/266783e4e09e4e9d5307c1c8e695659c58bbcac7/src/libstd/rt.rs:64 [INFO] [stderr] 22: 0x560dbbf3e51a - main [INFO] [stderr] 23: 0x7f2aa550c2e1 - __libc_start_main [INFO] [stderr] 24: 0x560dbbf3cb3a - _start [INFO] [stderr] 25: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "29e6d301312fd7adbf6273335629b7e7871578e0ba023a99d13e7e581ad295db"` [INFO] running `"docker" "rm" "-f" "29e6d301312fd7adbf6273335629b7e7871578e0ba023a99d13e7e581ad295db"` [INFO] [stdout] 29e6d301312fd7adbf6273335629b7e7871578e0ba023a99d13e7e581ad295db