[INFO] updating cached repository benwbooth/bam2bedgraph.rs [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/benwbooth/bam2bedgraph.rs [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/benwbooth/bam2bedgraph.rs" "work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/gh/benwbooth/bam2bedgraph.rs"` [INFO] [stderr] Cloning into 'work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/gh/benwbooth/bam2bedgraph.rs'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/benwbooth/bam2bedgraph.rs" "work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/benwbooth/bam2bedgraph.rs"` [INFO] [stderr] Cloning into 'work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/benwbooth/bam2bedgraph.rs'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] f8be435940bdc82cf94dd0a72bcd3730aa150537 [INFO] sha for GitHub repo benwbooth/bam2bedgraph.rs: f8be435940bdc82cf94dd0a72bcd3730aa150537 [INFO] validating manifest of benwbooth/bam2bedgraph.rs on toolchain master#60960a260f7b5c695fd0717311d72ce62dd4eb43 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of benwbooth/bam2bedgraph.rs on toolchain try#266783e4e09e4e9d5307c1c8e695659c58bbcac7 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing benwbooth/bam2bedgraph.rs [INFO] finished frobbing benwbooth/bam2bedgraph.rs [INFO] frobbed toml for benwbooth/bam2bedgraph.rs written to work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/gh/benwbooth/bam2bedgraph.rs/Cargo.toml [INFO] started frobbing benwbooth/bam2bedgraph.rs [INFO] finished frobbing benwbooth/bam2bedgraph.rs [INFO] frobbed toml for benwbooth/bam2bedgraph.rs written to work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/benwbooth/bam2bedgraph.rs/Cargo.toml [INFO] crate benwbooth/bam2bedgraph.rs already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking benwbooth/bam2bedgraph.rs against try#266783e4e09e4e9d5307c1c8e695659c58bbcac7 for pr-63376 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-63376/worker-2/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/benwbooth/bam2bedgraph.rs:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 24adf96d75763cfc0d977458e5e095c5fa5b24f8389814f484c01124594b9110 [INFO] running `"docker" "start" "-a" "24adf96d75763cfc0d977458e5e095c5fa5b24f8389814f484c01124594b9110"` [INFO] [stderr] Compiling unicode-xid v0.0.4 [INFO] [stderr] Compiling quote v0.3.15 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling cc v1.0.3 [INFO] [stderr] Checking libc v0.2.34 [INFO] [stderr] Checking matches v0.1.6 [INFO] [stderr] Compiling matrixmultiply v0.1.14 [INFO] [stderr] Compiling quick-error v1.2.1 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Checking memchr v1.0.2 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Checking unicode-width v0.1.4 [INFO] [stderr] Checking cfg-if v0.1.2 [INFO] [stderr] Checking lazy_static v1.0.0 [INFO] [stderr] Checking num-traits v0.1.41 [INFO] [stderr] Checking serde v1.0.24 [INFO] [stderr] Checking either v1.4.0 [INFO] [stderr] Checking unicode-normalization v0.1.5 [INFO] [stderr] Checking bitflags v0.9.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking ansi_term v0.10.2 [INFO] [stderr] Checking rustc-demangle v0.1.5 [INFO] [stderr] Checking regex-syntax v0.4.1 [INFO] [stderr] Checking bitflags v1.0.1 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Checking bit-vec v0.4.4 [INFO] [stderr] Checking strsim v0.6.0 [INFO] [stderr] Checking utf8-ranges v1.0.0 [INFO] [stderr] Checking ieee754 v0.2.2 [INFO] [stderr] Checking approx v0.1.1 [INFO] [stderr] Checking futures v0.1.17 [INFO] [stderr] Checking bytecount v0.1.7 [INFO] [stderr] Checking itoa v0.3.4 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking spin v0.4.6 [INFO] [stderr] Checking dtoa v0.4.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking lazycell v0.5.1 [INFO] [stderr] Checking unindent v0.1.2 [INFO] [stderr] Compiling synom v0.11.3 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking unreachable v1.0.0 [INFO] [stderr] Checking unreachable v0.1.1 [INFO] [stderr] Compiling fs-utils v1.0.0 [INFO] [stderr] Checking csv-core v0.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Checking textwrap v0.9.0 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking itertools v0.7.4 [INFO] [stderr] Checking memchr v2.0.1 [INFO] [stderr] Checking atty v0.2.3 [INFO] [stderr] Checking num_cpus v1.7.0 [INFO] [stderr] Checking nix v0.9.0 [INFO] [stderr] Checking num-complex v0.1.41 [INFO] [stderr] Checking itertools-num v0.1.1 [INFO] [stderr] Checking num-integer v0.1.35 [INFO] [stderr] Checking bit-set v0.4.0 [INFO] [stderr] Checking concurrent-hashmap v0.2.2 [INFO] [stderr] Compiling syn v0.11.11 [INFO] [stderr] Checking thread_local v0.3.5 [INFO] [stderr] Checking ordered-float v0.5.0 [INFO] [stderr] Checking idna v0.1.4 [INFO] [stderr] Checking aho-corasick v0.6.4 [INFO] [stderr] Compiling rust-htslib v0.15.0 (https://github.com/rust-bio/rust-htslib.git#0d44e289) [INFO] [stderr] Checking futures-cpupool v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking regex v0.2.3 [INFO] [stderr] Checking shared_child v0.3.2 [INFO] [stderr] Checking url v1.6.0 [INFO] [stderr] Compiling serde_derive_internals v0.18.0 [INFO] [stderr] Compiling synstructure v0.6.1 [INFO] [stderr] warning[E0713]: borrow may still be in use when destructor runs [INFO] [stderr] --> /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/url-1.6.0/src/form_urlencoded.rs:261:40 [INFO] [stderr] | [INFO] [stderr] 259 | impl<'a> Target for ::UrlQuery<'a> { [INFO] [stderr] | -- lifetime `'a` defined here [INFO] [stderr] 260 | fn as_mut_string(&mut self) -> &mut String { &mut self.url.serialization } [INFO] [stderr] 261 | fn finish(self) -> &'a mut ::Url { self.url } [INFO] [stderr] | ^^^^^^^^ - here, drop of `self` needs exclusive access to `*self.url`, because the type `UrlQuery<'_>` implements the `Drop` trait [INFO] [stderr] | | [INFO] [stderr] | returning this value requires that `*self.url` is borrowed for `'a` [INFO] [stderr] | [INFO] [stderr] = warning: this error has been downgraded to a warning for backwards compatibility with previous releases [INFO] [stderr] = warning: this represents potential undefined behavior in your code and this warning will become a hard error in the future [INFO] [stderr] = note: for more information, try `rustc --explain E0729` [INFO] [stderr] [INFO] [stderr] Checking os_pipe v0.6.0 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking serde_test v1.0.24 [INFO] [stderr] Checking csv v1.0.0-beta.5 [INFO] [stderr] Checking serde_json v1.0.8 [INFO] [stderr] Checking duct v0.9.2 [INFO] [stderr] Checking linked-hash-map v0.5.0 [INFO] [stderr] Compiling backtrace-sys v0.1.16 [INFO] [stderr] Compiling serde_derive v1.0.24 [INFO] [stderr] Compiling failure_derive v0.1.1 [INFO] [stderr] Compiling structopt-derive v0.1.6 [INFO] [stderr] Checking backtrace v0.3.4 [INFO] [stderr] Checking failure v0.1.1 [INFO] [stderr] Checking vec_map v0.8.0 [INFO] [stderr] Checking clap v2.29.0 [INFO] [stderr] Checking bio v0.15.0 [INFO] [stderr] Checking structopt v0.1.6 [INFO] [stderr] Checking bam2bedgraph v1.0.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/indexed_annotation.rs:447:39 [INFO] [stderr] | [INFO] [stderr] 447 | let mut output: BufWriter> = BufWriter::new( [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/indexed_annotation.rs:491:39 [INFO] [stderr] | [INFO] [stderr] 491 | let mut output: BufWriter> = BufWriter::new( [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/indexed_annotation.rs:703:37 [INFO] [stderr] | [INFO] [stderr] 703 | trackdb: &mut BufWriter>) [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:81:9 [INFO] [stderr] | [INFO] [stderr] 81 | / lazy_static! { [INFO] [stderr] 82 | | static ref COMMENT: Regex = Regex::new(r"^#").unwrap(); [INFO] [stderr] 83 | | static ref GTF_ATTR: Regex = Regex::new(r#"^(?P\S+)\s+(?:"(?P[^"]*)"|(?P\S+));\s*"#).unwrap(); [INFO] [stderr] 84 | | } [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:81:9 [INFO] [stderr] | [INFO] [stderr] 81 | / lazy_static! { [INFO] [stderr] 82 | | static ref COMMENT: Regex = Regex::new(r"^#").unwrap(); [INFO] [stderr] 83 | | static ref GTF_ATTR: Regex = Regex::new(r#"^(?P\S+)\s+(?:"(?P[^"]*)"|(?P\S+));\s*"#).unwrap(); [INFO] [stderr] 84 | | } [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:654:49 [INFO] [stderr] | [INFO] [stderr] 654 | / lazy_static! { [INFO] [stderr] 655 | | static ref TRANSCRIPT_RENAME: Regex = Regex::new(r"(?:\.([0-9]+))?$").unwrap(); [INFO] [stderr] 656 | | } [INFO] [stderr] | |_________________________________________________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:749:9 [INFO] [stderr] | [INFO] [stderr] 749 | / lazy_static! { [INFO] [stderr] 750 | | static ref HEADER: Regex = Regex::new(r"^>(\S*)([^\n]*)").unwrap(); [INFO] [stderr] 751 | | } [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:855:33 [INFO] [stderr] | [INFO] [stderr] 855 | / lazy_static! { [INFO] [stderr] 856 | | static ref FASTA_FORMAT: Regex = Regex::new(r".{1,72}").unwrap(); [INFO] [stderr] 857 | | } [INFO] [stderr] | |_________________________________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/indexed_annotation.rs:447:39 [INFO] [stderr] | [INFO] [stderr] 447 | let mut output: BufWriter> = BufWriter::new( [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/indexed_annotation.rs:491:39 [INFO] [stderr] | [INFO] [stderr] 491 | let mut output: BufWriter> = BufWriter::new( [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/indexed_annotation.rs:703:37 [INFO] [stderr] | [INFO] [stderr] 703 | trackdb: &mut BufWriter>) [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Write` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:81:9 [INFO] [stderr] | [INFO] [stderr] 81 | / lazy_static! { [INFO] [stderr] 82 | | static ref COMMENT: Regex = Regex::new(r"^#").unwrap(); [INFO] [stderr] 83 | | static ref GTF_ATTR: Regex = Regex::new(r#"^(?P\S+)\s+(?:"(?P[^"]*)"|(?P\S+));\s*"#).unwrap(); [INFO] [stderr] 84 | | } [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:81:9 [INFO] [stderr] | [INFO] [stderr] 81 | / lazy_static! { [INFO] [stderr] 82 | | static ref COMMENT: Regex = Regex::new(r"^#").unwrap(); [INFO] [stderr] 83 | | static ref GTF_ATTR: Regex = Regex::new(r#"^(?P\S+)\s+(?:"(?P[^"]*)"|(?P\S+));\s*"#).unwrap(); [INFO] [stderr] 84 | | } [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:654:49 [INFO] [stderr] | [INFO] [stderr] 654 | / lazy_static! { [INFO] [stderr] 655 | | static ref TRANSCRIPT_RENAME: Regex = Regex::new(r"(?:\.([0-9]+))?$").unwrap(); [INFO] [stderr] 656 | | } [INFO] [stderr] | |_________________________________________________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:749:9 [INFO] [stderr] | [INFO] [stderr] 749 | / lazy_static! { [INFO] [stderr] 750 | | static ref HEADER: Regex = Regex::new(r"^>(\S*)([^\n]*)").unwrap(); [INFO] [stderr] 751 | | } [INFO] [stderr] | |_________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/indexed_annotation.rs:855:33 [INFO] [stderr] | [INFO] [stderr] 855 | / lazy_static! { [INFO] [stderr] 856 | | static ref FASTA_FORMAT: Regex = Regex::new(r".{1,72}").unwrap(); [INFO] [stderr] 857 | | } [INFO] [stderr] | |_________________________________^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/lib.rs:131:28 [INFO] [stderr] | [INFO] [stderr] 131 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/lib.rs:131:28 [INFO] [stderr] | [INFO] [stderr] 131 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/lib.rs:131:53 [INFO] [stderr] | [INFO] [stderr] 131 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/lib.rs:131:53 [INFO] [stderr] | [INFO] [stderr] 131 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:199:36 [INFO] [stderr] | [INFO] [stderr] 199 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:199:61 [INFO] [stderr] | [INFO] [stderr] 199 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:199:36 [INFO] [stderr] | [INFO] [stderr] 199 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:199:61 [INFO] [stderr] | [INFO] [stderr] 199 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:217:36 [INFO] [stderr] | [INFO] [stderr] 217 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:217:36 [INFO] [stderr] | [INFO] [stderr] 217 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:217:61 [INFO] [stderr] | [INFO] [stderr] 217 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:217:61 [INFO] [stderr] | [INFO] [stderr] 217 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:236:32 [INFO] [stderr] | [INFO] [stderr] 236 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:236:32 [INFO] [stderr] | [INFO] [stderr] 236 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:236:57 [INFO] [stderr] | [INFO] [stderr] 236 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:236:57 [INFO] [stderr] | [INFO] [stderr] 236 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] error[E0283]: type annotations required: cannot resolve `std::string::String: std::convert::From<&_>` [INFO] [stderr] --> src/indexed_annotation.rs:538:52 [INFO] [stderr] | [INFO] [stderr] 538 | let exon_types = exon_types.iter().map(|t| String::from(t.as_ref())).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: required by `std::convert::From::from` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:759:32 [INFO] [stderr] | [INFO] [stderr] 759 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:759:57 [INFO] [stderr] | [INFO] [stderr] 759 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] error[E0283]: type annotations required: cannot resolve `std::string::String: std::convert::From<&_>` [INFO] [stderr] --> src/indexed_annotation.rs:538:52 [INFO] [stderr] | [INFO] [stderr] 538 | let exon_types = exon_types.iter().map(|t| String::from(t.as_ref())).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: required by `std::convert::From::from` [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] For more information about this error, try `rustc --explain E0283`. [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:759:32 [INFO] [stderr] | [INFO] [stderr] 759 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right_matches': superseded by `trim_end_matches` [INFO] [stderr] --> src/indexed_annotation.rs:759:57 [INFO] [stderr] | [INFO] [stderr] 759 | { let line = buf.trim_right_matches('\n').trim_right_matches('\r'); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: replace the use of the deprecated item: `trim_end_matches` [INFO] [stderr] [INFO] [stderr] error: Could not compile `bam2bedgraph`. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] For more information about this error, try `rustc --explain E0283`. [INFO] [stderr] error: Could not compile `bam2bedgraph`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `"docker" "inspect" "24adf96d75763cfc0d977458e5e095c5fa5b24f8389814f484c01124594b9110"` [INFO] running `"docker" "rm" "-f" "24adf96d75763cfc0d977458e5e095c5fa5b24f8389814f484c01124594b9110"` [INFO] [stdout] 24adf96d75763cfc0d977458e5e095c5fa5b24f8389814f484c01124594b9110