[INFO] updating cached repository 10XGenomics/rust-pseudoaligner [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/10XGenomics/rust-pseudoaligner [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 1229501709adb389886fde3a90609b12bd3b5055 [INFO] sha for GitHub repo 10XGenomics/rust-pseudoaligner: 1229501709adb389886fde3a90609b12bd3b5055 [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain master#60960a260f7b5c695fd0717311d72ce62dd4eb43 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain try#266783e4e09e4e9d5307c1c8e695659c58bbcac7 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/pr-63376/sources/master#60960a260f7b5c695fd0717311d72ce62dd4eb43/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] crate 10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+60960a260f7b5c695fd0717311d72ce62dd4eb43-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking 10XGenomics/rust-pseudoaligner against try#266783e4e09e4e9d5307c1c8e695659c58bbcac7 for pr-63376 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-63376/worker-5/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-63376/sources/try#266783e4e09e4e9d5307c1c8e695659c58bbcac7/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+266783e4e09e4e9d5307c1c8e695659c58bbcac7-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] ba23a27e255f005a7e10a13e57ca01e41b1cf874631c35f5aaf53b026b59d16c [INFO] running `"docker" "start" "-a" "ba23a27e255f005a7e10a13e57ca01e41b1cf874631c35f5aaf53b026b59d16c"` [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Checking termcolor v1.0.3 [INFO] [stderr] Checking spin v0.4.9 [INFO] [stderr] Checking byteorder v1.2.6 [INFO] [stderr] Checking pdqsort v1.0.3 [INFO] [stderr] Checking log v0.4.5 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking csv-core v0.1.4 [INFO] [stderr] Checking concurrent-hashmap v0.2.2 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking itertools-num v0.1.2 [INFO] [stderr] Checking num-bigint v0.2.0 [INFO] [stderr] Checking num-iter v0.1.37 [INFO] [stderr] Checking chrono v0.4.6 [INFO] [stderr] Checking flate2 v1.0.2 [INFO] [stderr] Checking crossbeam-deque v0.5.2 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking env_logger v0.5.13 [INFO] [stderr] Checking serde v1.0.78 [INFO] [stderr] Checking crossbeam v0.4.1 [INFO] [stderr] Checking pretty_env_logger v0.2.3 (https://github.com/k3yavi/pretty-env-logger#57963895) [INFO] [stderr] Checking num-rational v0.2.1 [INFO] [stderr] Checking num v0.2.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking boomphf v0.2.1 (https://github.com/10XGenomics/rust-boomphf#93460338) [INFO] [stderr] Checking serde_json v1.0.27 [INFO] [stderr] Checking csv v1.0.1 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bio-types v0.2.0 [INFO] [stderr] Checking docopt v1.0.1 [INFO] [stderr] Checking bincode v1.0.1 [INFO] [stderr] Checking bio v0.22.0 [INFO] [stderr] Checking debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn#4f12ecdc) [INFO] [stderr] Checking debruijn_mapping v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stderr] --> src/build_index.rs:82:1 [INFO] [stderr] | [INFO] [stderr] 82 | / lazy_static! { [INFO] [stderr] 83 | | static ref PERM: Vec = { [INFO] [stderr] 84 | | let maxp = 1 << (2 * PmerType::k()); [INFO] [stderr] 85 | | let mut permutation = Vec::with_capacity(maxp); [INFO] [stderr] ... | [INFO] [stderr] 90 | | }; [INFO] [stderr] 91 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 06s [INFO] running `"docker" "inspect" "ba23a27e255f005a7e10a13e57ca01e41b1cf874631c35f5aaf53b026b59d16c"` [INFO] running `"docker" "rm" "-f" "ba23a27e255f005a7e10a13e57ca01e41b1cf874631c35f5aaf53b026b59d16c"` [INFO] [stdout] ba23a27e255f005a7e10a13e57ca01e41b1cf874631c35f5aaf53b026b59d16c