[INFO] crate chemfiles-sys 0.9.1 is already in cache [INFO] extracting crate chemfiles-sys 0.9.1 into work/ex/pr-63247/sources/master#452087b4bf18cece2d52d7cd8c9147195e5404bf/reg/chemfiles-sys/0.9.1 [INFO] extracting crate chemfiles-sys 0.9.1 into work/ex/pr-63247/sources/try#757dacae0a9f1b46b3ab58a1f1232332e8fc7dab/reg/chemfiles-sys/0.9.1 [INFO] validating manifest of chemfiles-sys-0.9.1 on toolchain master#452087b4bf18cece2d52d7cd8c9147195e5404bf [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+452087b4bf18cece2d52d7cd8c9147195e5404bf-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of chemfiles-sys-0.9.1 on toolchain try#757dacae0a9f1b46b3ab58a1f1232332e8fc7dab [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+757dacae0a9f1b46b3ab58a1f1232332e8fc7dab-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing chemfiles-sys-0.9.1 [INFO] finished frobbing chemfiles-sys-0.9.1 [INFO] frobbed toml for chemfiles-sys-0.9.1 written to work/ex/pr-63247/sources/master#452087b4bf18cece2d52d7cd8c9147195e5404bf/reg/chemfiles-sys/0.9.1/Cargo.toml [INFO] started frobbing chemfiles-sys-0.9.1 [INFO] finished frobbing chemfiles-sys-0.9.1 [INFO] frobbed toml for chemfiles-sys-0.9.1 written to work/ex/pr-63247/sources/try#757dacae0a9f1b46b3ab58a1f1232332e8fc7dab/reg/chemfiles-sys/0.9.1/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+452087b4bf18cece2d52d7cd8c9147195e5404bf-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+757dacae0a9f1b46b3ab58a1f1232332e8fc7dab-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+452087b4bf18cece2d52d7cd8c9147195e5404bf-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+757dacae0a9f1b46b3ab58a1f1232332e8fc7dab-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking chemfiles-sys-0.9.1 against try#757dacae0a9f1b46b3ab58a1f1232332e8fc7dab for pr-63247 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-63247/worker-5/try#757dacae0a9f1b46b3ab58a1f1232332e8fc7dab:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-63247/sources/try#757dacae0a9f1b46b3ab58a1f1232332e8fc7dab/reg/chemfiles-sys/0.9.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+757dacae0a9f1b46b3ab58a1f1232332e8fc7dab-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 8ba19d3d08e0796494d18a2c8370f6348b73848cf60b320b2d319b3b97fc9082 [INFO] running `"docker" "start" "-a" "8ba19d3d08e0796494d18a2c8370f6348b73848cf60b320b2d319b3b97fc9082"` [INFO] [stderr] Compiling chemfiles-sys v0.9.1 (/opt/crater/workdir) [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.1 (/opt/crater/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/crater/target/debug/build/chemfiles-sys-dfa7f521a8f1c941/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/crater/workdir/." "-DCMAKE_INSTALL_PREFIX=/opt/crater/target/debug/build/chemfiles-sys-88ff6e660f4eabbd/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 6.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 6.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/crater/target/debug/build/chemfiles-sys-88ff6e660f4eabbd/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/posix.cc.o [INFO] [stderr] [ 1%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.o [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 3%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] Scanning dependencies of target 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[INFO] [stderr] /opt/crater/workdir/chemfiles/src/files/XzFile.cpp: In member function 'virtual std::basic_streambuf::pos_type chemfiles::xzstreambuf::seekpos(std::basic_streambuf::pos_type, std::ios_base::openmode)': [INFO] [stderr] /opt/crater/workdir/chemfiles/src/files/XzFile.cpp:309:75: warning: conversion to 'long unsigned int' from 'long int' may change the sign of the result [-Wsign-conversion] [INFO] [stderr] if (iter.block.compressed_file_offset > std::numeric_limits::max()) { [INFO] [stderr] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/MMTF.cpp.o] Error 4 [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56374e77c02b - backtrace::backtrace::libunwind::trace::h098b67cd5ecf24d4 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x56374e77c02b - backtrace::backtrace::trace_unsynchronized::h41f8ecb0b6b75123 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.34/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x56374e77c02b - std::sys_common::backtrace::_print::h6bdd5779472ab8c6 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stderr] 3: 0x56374e77c02b - std::sys_common::backtrace::print::h535418cbcfd3b064 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stderr] 4: 0x56374e77c02b - std::panicking::default_hook::{{closure}}::h8962ad5cd6daeea4 [INFO] [stderr] at src/libstd/panicking.rs:200 [INFO] [stderr] 5: 0x56374e77bd06 - std::panicking::default_hook::h39b428958abf2606 [INFO] [stderr] at src/libstd/panicking.rs:214 [INFO] [stderr] 6: 0x56374e77c73d - std::panicking::rust_panic_with_hook::hec5b145cd2b2dbe3 [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 7: 0x56374e77c2c2 - std::panicking::continue_panic_fmt::h499883e21d98c9ea [INFO] [stderr] at src/libstd/panicking.rs:384 [INFO] [stderr] 8: 0x56374e77c20f - std::panicking::begin_panic_fmt::hc0aeb5432668577f [INFO] [stderr] at src/libstd/panicking.rs:339 [INFO] [stderr] 9: 0x56374e6fab66 - cmake::fail::hd009c1493ca9e738 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 10: 0x56374e6fa4ea - cmake::run::he54aecee74ec6a08 [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 11: 0x56374e6f6c69 - cmake::Config::build::h9166253fb9910dda [INFO] [stderr] at /opt/crater/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:745 [INFO] [stderr] 12: 0x56374e6f154f - build_script_build::build_chemfiles::h5a7ff8c1097b431a [INFO] [stderr] at /opt/crater/workdir/build.rs:18 [INFO] [stderr] 13: 0x56374e6f136e - build_script_build::main::hd74150d2026d91a3 [INFO] [stderr] at /opt/crater/workdir/build.rs:8 [INFO] [stderr] 14: 0x56374e6f2a90 - std::rt::lang_start::{{closure}}::h19783d2c02099bb0 [INFO] [stderr] at /rustc/757dacae0a9f1b46b3ab58a1f1232332e8fc7dab/src/libstd/rt.rs:64 [INFO] [stderr] 15: 0x56374e77c143 - std::rt::lang_start_internal::{{closure}}::h1d5b2f63d8aab9e2 [INFO] [stderr] at src/libstd/rt.rs:49 [INFO] [stderr] 16: 0x56374e77c143 - std::panicking::try::do_call::h23b1282500223f6a [INFO] [stderr] at src/libstd/panicking.rs:296 [INFO] [stderr] 17: 0x56374e78353a - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:80 [INFO] [stderr] 18: 0x56374e77cc4d - std::panicking::try::hf851d9cd2a46569f [INFO] [stderr] at src/libstd/panicking.rs:275 [INFO] [stderr] 19: 0x56374e77cc4d - std::panic::catch_unwind::h38ad47fd47b8a319 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 20: 0x56374e77cc4d - std::rt::lang_start_internal::h8489a7c3e11328c4 [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 21: 0x56374e6f2a69 - std::rt::lang_start::hdc95a74bc12fa833 [INFO] [stderr] at /rustc/757dacae0a9f1b46b3ab58a1f1232332e8fc7dab/src/libstd/rt.rs:64 [INFO] [stderr] 22: 0x56374e6f1e7a - main [INFO] [stderr] 23: 0x7f98fb89a2e1 - __libc_start_main [INFO] [stderr] 24: 0x56374e6f10ba - _start [INFO] [stderr] 25: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "8ba19d3d08e0796494d18a2c8370f6348b73848cf60b320b2d319b3b97fc9082"` [INFO] running `"docker" "rm" "-f" "8ba19d3d08e0796494d18a2c8370f6348b73848cf60b320b2d319b3b97fc9082"` [INFO] [stdout] 8ba19d3d08e0796494d18a2c8370f6348b73848cf60b320b2d319b3b97fc9082