[INFO] updating cached repository bihealth/var-agg
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/bihealth/var-agg
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/bihealth/var-agg" "work/ex/pr-62849/sources/master#435236b8877cdb98c82eaebfb7887782277265c5/gh/bihealth/var-agg"`
[INFO] [stderr] Cloning into 'work/ex/pr-62849/sources/master#435236b8877cdb98c82eaebfb7887782277265c5/gh/bihealth/var-agg'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/bihealth/var-agg" "work/ex/pr-62849/sources/try#b5c7f157c20453dde8d47371abe73b32351b4e7f/gh/bihealth/var-agg"`
[INFO] [stderr] Cloning into 'work/ex/pr-62849/sources/try#b5c7f157c20453dde8d47371abe73b32351b4e7f/gh/bihealth/var-agg'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 8b199088fe24970bcd004d5f7c1c9cd174a0e82d
[INFO] sha for GitHub repo bihealth/var-agg: 8b199088fe24970bcd004d5f7c1c9cd174a0e82d
[INFO] validating manifest of bihealth/var-agg on toolchain master#435236b8877cdb98c82eaebfb7887782277265c5
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+435236b8877cdb98c82eaebfb7887782277265c5-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of bihealth/var-agg on toolchain try#b5c7f157c20453dde8d47371abe73b32351b4e7f
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+b5c7f157c20453dde8d47371abe73b32351b4e7f-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing bihealth/var-agg
[INFO] finished frobbing bihealth/var-agg
[INFO] frobbed toml for bihealth/var-agg written to work/ex/pr-62849/sources/master#435236b8877cdb98c82eaebfb7887782277265c5/gh/bihealth/var-agg/Cargo.toml
[INFO] started frobbing bihealth/var-agg
[INFO] finished frobbing bihealth/var-agg
[INFO] frobbed toml for bihealth/var-agg written to work/ex/pr-62849/sources/try#b5c7f157c20453dde8d47371abe73b32351b4e7f/gh/bihealth/var-agg/Cargo.toml
[INFO] crate bihealth/var-agg already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+435236b8877cdb98c82eaebfb7887782277265c5-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+b5c7f157c20453dde8d47371abe73b32351b4e7f-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] checking bihealth/var-agg against try#b5c7f157c20453dde8d47371abe73b32351b4e7f for pr-62849
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-62849/worker-6/try#b5c7f157c20453dde8d47371abe73b32351b4e7f:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-62849/sources/try#b5c7f157c20453dde8d47371abe73b32351b4e7f/gh/bihealth/var-agg:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+b5c7f157c20453dde8d47371abe73b32351b4e7f-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] c961a8e21e5ae45019269a6ab7abba71c08643cfedef7c657c06f212e39149f3
[INFO] running `"docker" "start" "-a" "c961a8e21e5ae45019269a6ab7abba71c08643cfedef7c657c06f212e39149f3"`
[INFO] [stderr]    Compiling proc-macro2 v0.4.17
[INFO] [stderr]    Compiling serde v1.0.76
[INFO] [stderr]    Compiling cc v1.0.23
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling termcolor v1.0.3
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]     Checking slog v2.3.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking shlex v0.1.1
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling aho-corasick v0.6.8
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking csv-core v0.1.4
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]     Checking num-complex v0.1.43
[INFO] [stderr]     Checking itertools-num v0.1.2
[INFO] [stderr]     Checking url v1.7.1
[INFO] [stderr]     Checking statrs v0.9.0
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]     Checking chrono v0.4.6
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]     Checking regex v0.2.11
[INFO] [stderr]     Checking slog-async v2.3.0
[INFO] [stderr]    Compiling regex v1.0.4
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling backtrace-sys v0.1.24
[INFO] [stderr]     Checking slog-term v2.4.0
[INFO] [stderr]     Checking backtrace v0.3.9
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]     Checking error-chain v0.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.76
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking csv v1.0.1
[INFO] [stderr]     Checking bio-types v0.2.0
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking bio v0.22.0
[INFO] [stderr]    Compiling rust-htslib v0.21.0
[INFO] [stderr]     Checking var-agg v0.1.1 (/opt/crater/workdir)
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 48s
[INFO] running `"docker" "inspect" "c961a8e21e5ae45019269a6ab7abba71c08643cfedef7c657c06f212e39149f3"`
[INFO] running `"docker" "rm" "-f" "c961a8e21e5ae45019269a6ab7abba71c08643cfedef7c657c06f212e39149f3"`
[INFO] [stdout] c961a8e21e5ae45019269a6ab7abba71c08643cfedef7c657c06f212e39149f3