[INFO] updating cached repository bihealth/var-agg
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/bihealth/var-agg
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/bihealth/var-agg" "work/ex/pr-62507/sources/master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7/gh/bihealth/var-agg"`
[INFO] [stderr] Cloning into 'work/ex/pr-62507/sources/master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7/gh/bihealth/var-agg'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/bihealth/var-agg" "work/ex/pr-62507/sources/try#18481b65f318e0b4b20c0fc61340054701719d6c/gh/bihealth/var-agg"`
[INFO] [stderr] Cloning into 'work/ex/pr-62507/sources/try#18481b65f318e0b4b20c0fc61340054701719d6c/gh/bihealth/var-agg'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 8b199088fe24970bcd004d5f7c1c9cd174a0e82d
[INFO] sha for GitHub repo bihealth/var-agg: 8b199088fe24970bcd004d5f7c1c9cd174a0e82d
[INFO] validating manifest of bihealth/var-agg on toolchain master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+78ca1bda3522b14bc0336bc01dd1d49fdba2cda7-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of bihealth/var-agg on toolchain try#18481b65f318e0b4b20c0fc61340054701719d6c
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+18481b65f318e0b4b20c0fc61340054701719d6c-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing bihealth/var-agg
[INFO] finished frobbing bihealth/var-agg
[INFO] frobbed toml for bihealth/var-agg written to work/ex/pr-62507/sources/master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7/gh/bihealth/var-agg/Cargo.toml
[INFO] started frobbing bihealth/var-agg
[INFO] finished frobbing bihealth/var-agg
[INFO] frobbed toml for bihealth/var-agg written to work/ex/pr-62507/sources/try#18481b65f318e0b4b20c0fc61340054701719d6c/gh/bihealth/var-agg/Cargo.toml
[INFO] crate bihealth/var-agg already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+78ca1bda3522b14bc0336bc01dd1d49fdba2cda7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+18481b65f318e0b4b20c0fc61340054701719d6c-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] checking bihealth/var-agg against master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7 for pr-62507
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-62507/worker-5/master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-62507/sources/master#78ca1bda3522b14bc0336bc01dd1d49fdba2cda7/gh/bihealth/var-agg:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+78ca1bda3522b14bc0336bc01dd1d49fdba2cda7-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 5b4b1fb06479a548552a29a4f0147ac1c3b1105fccd2363bcb9b919902d4dc6b
[INFO] running `"docker" "start" "-a" "5b4b1fb06479a548552a29a4f0147ac1c3b1105fccd2363bcb9b919902d4dc6b"`
[INFO] [stderr]    Compiling serde v1.0.76
[INFO] [stderr]     Checking ieee754 v0.2.2
[INFO] [stderr]     Checking slog v2.3.3
[INFO] [stderr]     Checking statrs v0.9.0
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]     Checking ndarray v0.9.1
[INFO] [stderr]     Checking chrono v0.4.6
[INFO] [stderr]     Checking regex v0.2.11
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]     Checking slog-async v2.3.0
[INFO] [stderr]     Checking slog-term v2.4.0
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking bv v0.7.4
[INFO] [stderr]     Checking bio-types v0.2.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking csv v1.0.1
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking bio v0.22.0
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling rust-htslib v0.21.0
[INFO] [stderr]     Checking var-agg v0.1.1 (/opt/crater/workdir)
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 34s
[INFO] running `"docker" "inspect" "5b4b1fb06479a548552a29a4f0147ac1c3b1105fccd2363bcb9b919902d4dc6b"`
[INFO] running `"docker" "rm" "-f" "5b4b1fb06479a548552a29a4f0147ac1c3b1105fccd2363bcb9b919902d4dc6b"`
[INFO] [stdout] 5b4b1fb06479a548552a29a4f0147ac1c3b1105fccd2363bcb9b919902d4dc6b