[INFO] fetching crate varlociraptor 1.1.1...
[INFO] checking varlociraptor-1.1.1 against try#ea663bba38739867a4b75ac820991b4f5d093c3b for pr-62262-1
[INFO] extracting crate varlociraptor 1.1.1 into /workspace/builds/worker-12/source
[INFO] validating manifest of crates.io crate varlociraptor 1.1.1 on toolchain ea663bba38739867a4b75ac820991b4f5d093c3b
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate varlociraptor 1.1.1
[INFO] finished tweaking crates.io crate varlociraptor 1.1.1
[INFO] tweaked toml for crates.io crate varlociraptor 1.1.1 written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded cached v0.7.0
[INFO] [stderr]   Downloaded rulinalg v0.2.2
[INFO] [stderr]   Downloaded rusty-machine v0.4.4
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] ce90fc33e247f67f3fd8ab20eda4da99cee0e8734b0b9d69144e40a5895d3ac1
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `"docker" "start" "-a" "ce90fc33e247f67f3fd8ab20eda4da99cee0e8734b0b9d69144e40a5895d3ac1"`
[INFO] [stderr]    Compiling bio v0.28.2
[INFO] [stderr]    Compiling ndarray v0.6.10
[INFO] [stderr]     Checking cached v0.7.0
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]    Compiling GSL v1.1.0
[INFO] [stderr]     Checking itertools v0.5.10
[INFO] [stderr]     Checking counter v0.4.3
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling structopt-derive v0.2.18
[INFO] [stderr]    Compiling getset v0.0.7
[INFO] [stderr]    Compiling toml v0.4.10
[INFO] [stderr]     Checking bio-types v0.4.0
[INFO] [stderr]     Checking rulinalg v0.2.2
[INFO] [stderr]     Checking chrono v0.2.25
[INFO] [stderr]     Checking askama_shared v0.8.0
[INFO] [stderr]     Checking eval v0.4.3
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]     Checking ftp v3.0.1
[INFO] [stderr]     Checking rusty-machine v0.4.4
[INFO] [stderr]     Checking structopt v0.2.18
[INFO] [stderr]    Compiling askama_derive v0.8.0
[INFO] [stderr]     Checking askama v0.8.0
[INFO] [stderr]    Compiling rust-htslib v0.23.0
[INFO] [stderr]     Checking varlociraptor v1.1.1 (/opt/rustwide/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/call.rs:94:73
[INFO] [stderr]    |
[INFO] [stderr] 94 |     pub fn reference<P: AsRef<Path>>(self, path: P) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:100:77
[INFO] [stderr]     |
[INFO] [stderr] 100 |     pub fn inbcf<P: AsRef<Path>>(self, path: Option<P>) -> Result<Self, Box<Error>> {
[INFO] [stderr]     |                                                                             ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:162:78
[INFO] [stderr]     |
[INFO] [stderr] 162 |     pub fn outbcf<P: AsRef<Path>>(self, path: Option<P>) -> Result<Self, Box<Error>> {
[INFO] [stderr]     |                                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:259:46
[INFO] [stderr]     |
[INFO] [stderr] 259 |     pub fn call(&mut self) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:283:61
[INFO] [stderr]     |
[INFO] [stderr] 283 |     fn write_call(&mut self, call: &Call) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                                             ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:425:35
[INFO] [stderr]     |
[INFO] [stderr] 425 |     ) -> Result<Option<Call>, Box<Error>> {
[INFO] [stderr]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/call_cnvs.rs:63:27
[INFO] [stderr]    |
[INFO] [stderr] 63 |     ) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                           ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:154:46
[INFO] [stderr]     |
[INFO] [stderr] 154 |     pub fn call(&mut self) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:214:36
[INFO] [stderr]     |
[INFO] [stderr] 214 |         let mean_depth = |filter: &Fn(&Call) -> u32| {
[INFO] [stderr]     |                                    ^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&Call) -> u32`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:312:25
[INFO] [stderr]     |
[INFO] [stderr] 312 |     ) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:533:11
[INFO] [stderr]     |
[INFO] [stderr] 533 |     hmm: &hmm::Model<O>,
[INFO] [stderr]     |           ^^^^^^^^^^^^^ help: use `dyn`: `dyn hmm::Model<O>`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:546:11
[INFO] [stderr]     |
[INFO] [stderr] 546 |     hmm: &hmm::Model<O>,
[INFO] [stderr]     |           ^^^^^^^^^^^^^ help: use `dyn`: `dyn hmm::Model<O>`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:587:70
[INFO] [stderr]     |
[INFO] [stderr] 587 |     pub fn new(record: &mut bcf::Record) -> Result<Option<Self>, Box<Error>> {
[INFO] [stderr]     |                                                                      ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli.rs:311:50
[INFO] [stderr]     |
[INFO] [stderr] 311 | pub fn run(opt: Varlociraptor) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/call.rs:94:73
[INFO] [stderr]    |
[INFO] [stderr] 94 |     pub fn reference<P: AsRef<Path>>(self, path: P) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:100:77
[INFO] [stderr]     |
[INFO] [stderr] 100 |     pub fn inbcf<P: AsRef<Path>>(self, path: Option<P>) -> Result<Self, Box<Error>> {
[INFO] [stderr]     |                                                                             ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:162:78
[INFO] [stderr]     |
[INFO] [stderr] 162 |     pub fn outbcf<P: AsRef<Path>>(self, path: Option<P>) -> Result<Self, Box<Error>> {
[INFO] [stderr]     |                                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:259:46
[INFO] [stderr]     |
[INFO] [stderr] 259 |     pub fn call(&mut self) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:283:61
[INFO] [stderr]     |
[INFO] [stderr] 283 |     fn write_call(&mut self, call: &Call) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                                             ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call.rs:425:35
[INFO] [stderr]     |
[INFO] [stderr] 425 |     ) -> Result<Option<Call>, Box<Error>> {
[INFO] [stderr]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/call_cnvs.rs:63:27
[INFO] [stderr]    |
[INFO] [stderr] 63 |     ) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                           ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:154:46
[INFO] [stderr]     |
[INFO] [stderr] 154 |     pub fn call(&mut self) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:214:36
[INFO] [stderr]     |
[INFO] [stderr] 214 |         let mean_depth = |filter: &Fn(&Call) -> u32| {
[INFO] [stderr]     |                                    ^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn Fn(&Call) -> u32`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:312:25
[INFO] [stderr]     |
[INFO] [stderr] 312 |     ) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:533:11
[INFO] [stderr]     |
[INFO] [stderr] 533 |     hmm: &hmm::Model<O>,
[INFO] [stderr]     |           ^^^^^^^^^^^^^ help: use `dyn`: `dyn hmm::Model<O>`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:546:11
[INFO] [stderr]     |
[INFO] [stderr] 546 |     hmm: &hmm::Model<O>,
[INFO] [stderr]     |           ^^^^^^^^^^^^^ help: use `dyn`: `dyn hmm::Model<O>`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call_cnvs.rs:587:70
[INFO] [stderr]     |
[INFO] [stderr] 587 |     pub fn new(record: &mut bcf::Record) -> Result<Option<Self>, Box<Error>> {
[INFO] [stderr]     |                                                                      ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli.rs:311:50
[INFO] [stderr]     |
[INFO] [stderr] 311 | pub fn run(opt: Varlociraptor) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli.rs:685:38
[INFO] [stderr]     |
[INFO] [stderr] 685 | ) -> Result<AlignmentProperties, Box<Error>> {
[INFO] [stderr]     |                                      ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]  --> src/conversion/decode_phred.rs:9:41
[INFO] [stderr]   |
[INFO] [stderr] 9 | pub fn decode_phred() -> Result<(), Box<Error>> {
[INFO] [stderr]   |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli.rs:685:38
[INFO] [stderr]     |
[INFO] [stderr] 685 | ) -> Result<AlignmentProperties, Box<Error>> {
[INFO] [stderr]     |                                      ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]  --> src/conversion/decode_phred.rs:9:41
[INFO] [stderr]   |
[INFO] [stderr] 9 | pub fn decode_phred() -> Result<(), Box<Error>> {
[INFO] [stderr]   |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/estimation/alignment_properties.rs:74:68
[INFO] [stderr]    |
[INFO] [stderr] 74 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/estimation/alignment_properties.rs:74:68
[INFO] [stderr]    |
[INFO] [stderr] 74 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/estimation/alignment_properties.rs:154:33
[INFO] [stderr]     |
[INFO] [stderr] 154 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stderr]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/estimation/alignment_properties.rs:154:33
[INFO] [stderr]     |
[INFO] [stderr] 154 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stderr]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filtration/fdr.rs:40:21
[INFO] [stderr]    |
[INFO] [stderr] 40 | ) -> Result<(), Box<Error>>
[INFO] [stderr]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filtration/posterior_odds.rs:23:21
[INFO] [stderr]    |
[INFO] [stderr] 23 | ) -> Result<(), Box<Error>>
[INFO] [stderr]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filtration/fdr.rs:40:21
[INFO] [stderr]    |
[INFO] [stderr] 40 | ) -> Result<(), Box<Error>>
[INFO] [stderr]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filtration/posterior_odds.rs:23:21
[INFO] [stderr]    |
[INFO] [stderr] 23 | ) -> Result<(), Box<Error>>
[INFO] [stderr]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:58:89
[INFO] [stderr]    |
[INFO] [stderr] 58 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stderr]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:62:68
[INFO] [stderr]    |
[INFO] [stderr] 62 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/fragments.rs:143:41
[INFO] [stderr]     |
[INFO] [stderr] 143 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:37:49
[INFO] [stderr]    |
[INFO] [stderr] 37 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:77:49
[INFO] [stderr]    |
[INFO] [stderr] 77 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:123:49
[INFO] [stderr]     |
[INFO] [stderr] 123 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:214:49
[INFO] [stderr]     |
[INFO] [stderr] 214 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/sample.rs:77:82
[INFO] [stderr]    |
[INFO] [stderr] 77 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stderr]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:192:60
[INFO] [stderr]     |
[INFO] [stderr] 192 | ) -> Result<alignment_properties::AlignmentProperties, Box<Error>> {
[INFO] [stderr]     |                                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:274:29
[INFO] [stderr]     |
[INFO] [stderr] 274 |     ) -> Result<Pileup, Box<Error>> {
[INFO] [stderr]     |                             ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:475:42
[INFO] [stderr]     |
[INFO] [stderr] 475 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:476:34
[INFO] [stderr]     |
[INFO] [stderr] 476 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stderr]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:538:42
[INFO] [stderr]     |
[INFO] [stderr] 538 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:541:44
[INFO] [stderr]     |
[INFO] [stderr] 541 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:58:89
[INFO] [stderr]    |
[INFO] [stderr] 58 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stderr]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:62:68
[INFO] [stderr]    |
[INFO] [stderr] 62 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/fragments.rs:143:41
[INFO] [stderr]     |
[INFO] [stderr] 143 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/testcase.rs:75:72
[INFO] [stderr]    |
[INFO] [stderr] 75 |     pub fn reference(self, path: impl AsRef<Path>) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                        ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/testcase.rs:79:73
[INFO] [stderr]    |
[INFO] [stderr] 79 |     pub fn candidates(self, path: impl AsRef<Path>) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:37:49
[INFO] [stderr]    |
[INFO] [stderr] 37 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/testcase.rs:83:57
[INFO] [stderr]    |
[INFO] [stderr] 83 |     pub fn locus(self, locus: &str) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:77:49
[INFO] [stderr]    |
[INFO] [stderr] 77 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/testcase.rs:126:60
[INFO] [stderr]     |
[INFO] [stderr] 126 |     fn variants(&mut self) -> Result<Vec<bcf::Record>, Box<Error>> {
[INFO] [stderr]     |                                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/testcase.rs:155:47
[INFO] [stderr]     |
[INFO] [stderr] 155 |     pub fn write(&mut self) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                               ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:123:49
[INFO] [stderr]     |
[INFO] [stderr] 123 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:214:49
[INFO] [stderr]     |
[INFO] [stderr] 214 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/utils.rs:81:46
[INFO] [stderr]    |
[INFO] [stderr] 81 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stderr]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:282:62
[INFO] [stderr]     |
[INFO] [stderr] 282 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stderr]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:310:39
[INFO] [stderr]     |
[INFO] [stderr] 310 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stderr]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:363:35
[INFO] [stderr]     |
[INFO] [stderr] 363 | ) -> Result<Vec<NotNan<f64>>, Box<Error>>
[INFO] [stderr]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:407:21
[INFO] [stderr]     |
[INFO] [stderr] 407 | ) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:436:47
[INFO] [stderr]     |
[INFO] [stderr] 436 |     F: Fn(&mut bcf::Record) -> Result<II, Box<Error>>,
[INFO] [stderr]     |                                               ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:434:21
[INFO] [stderr]     |
[INFO] [stderr] 434 | ) -> Result<(), Box<Error>>
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:489:30
[INFO] [stderr]     |
[INFO] [stderr] 489 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stderr]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/sample.rs:77:82
[INFO] [stderr]    |
[INFO] [stderr] 77 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stderr]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:192:60
[INFO] [stderr]     |
[INFO] [stderr] 192 | ) -> Result<alignment_properties::AlignmentProperties, Box<Error>> {
[INFO] [stderr]     |                                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:274:29
[INFO] [stderr]     |
[INFO] [stderr] 274 |     ) -> Result<Pileup, Box<Error>> {
[INFO] [stderr]     |                             ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:475:42
[INFO] [stderr]     |
[INFO] [stderr] 475 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:476:34
[INFO] [stderr]     |
[INFO] [stderr] 476 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stderr]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:538:42
[INFO] [stderr]     |
[INFO] [stderr] 538 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:541:44
[INFO] [stderr]     |
[INFO] [stderr] 541 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/testcase.rs:75:72
[INFO] [stderr]    |
[INFO] [stderr] 75 |     pub fn reference(self, path: impl AsRef<Path>) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                        ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/testcase.rs:79:73
[INFO] [stderr]    |
[INFO] [stderr] 79 |     pub fn candidates(self, path: impl AsRef<Path>) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/testcase.rs:83:57
[INFO] [stderr]    |
[INFO] [stderr] 83 |     pub fn locus(self, locus: &str) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/testcase.rs:126:60
[INFO] [stderr]     |
[INFO] [stderr] 126 |     fn variants(&mut self) -> Result<Vec<bcf::Record>, Box<Error>> {
[INFO] [stderr]     |                                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/testcase.rs:155:47
[INFO] [stderr]     |
[INFO] [stderr] 155 |     pub fn write(&mut self) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                                               ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/utils.rs:81:46
[INFO] [stderr]    |
[INFO] [stderr] 81 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stderr]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:282:62
[INFO] [stderr]     |
[INFO] [stderr] 282 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stderr]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:310:39
[INFO] [stderr]     |
[INFO] [stderr] 310 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stderr]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:363:35
[INFO] [stderr]     |
[INFO] [stderr] 363 | ) -> Result<Vec<NotNan<f64>>, Box<Error>>
[INFO] [stderr]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:407:21
[INFO] [stderr]     |
[INFO] [stderr] 407 | ) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:436:47
[INFO] [stderr]     |
[INFO] [stderr] 436 |     F: Fn(&mut bcf::Record) -> Result<II, Box<Error>>,
[INFO] [stderr]     |                                               ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:434:21
[INFO] [stderr]     |
[INFO] [stderr] 434 | ) -> Result<(), Box<Error>>
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:489:30
[INFO] [stderr]     |
[INFO] [stderr] 489 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stderr]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/model/evidence/reads.rs:392:1
[INFO] [stderr]     |
[INFO] [stderr] 392 | / lazy_static! {
[INFO] [stderr] 393 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stderr] 394 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/model/likelihood.rs:154:1
[INFO] [stderr]     |
[INFO] [stderr] 154 | / lazy_static! {
[INFO] [stderr] 155 | |     static ref PROB_STRAND: LogProb = LogProb(0.5_f64.ln());
[INFO] [stderr] 156 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/testcase.rs:25:1
[INFO] [stderr]    |
[INFO] [stderr] 25 | / lazy_static! {
[INFO] [stderr] 26 | |     static ref TESTCASE_RE: Regex =
[INFO] [stderr] 27 | |         Regex::new(r"^(?P<chrom>[^:]+):(?P<pos>\d+)(:(?P<idx>\d+))?$").unwrap();
[INFO] [stderr] 28 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/model/evidence/reads.rs:392:1
[INFO] [stderr]     |
[INFO] [stderr] 392 | / lazy_static! {
[INFO] [stderr] 393 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stderr] 394 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/model/likelihood.rs:154:1
[INFO] [stderr]     |
[INFO] [stderr] 154 | / lazy_static! {
[INFO] [stderr] 155 | |     static ref PROB_STRAND: LogProb = LogProb(0.5_f64.ln());
[INFO] [stderr] 156 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/testcase.rs:25:1
[INFO] [stderr]    |
[INFO] [stderr] 25 | / lazy_static! {
[INFO] [stderr] 26 | |     static ref TESTCASE_RE: Regex =
[INFO] [stderr] 27 | |         Regex::new(r"^(?P<chrom>[^:]+):(?P<pos>\d+)(:(?P<idx>\d+))?$").unwrap();
[INFO] [stderr] 28 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 29s
[INFO] running `"docker" "inspect" "ce90fc33e247f67f3fd8ab20eda4da99cee0e8734b0b9d69144e40a5895d3ac1"`
[INFO] running `"docker" "rm" "-f" "ce90fc33e247f67f3fd8ab20eda4da99cee0e8734b0b9d69144e40a5895d3ac1"`
[INFO] [stdout] ce90fc33e247f67f3fd8ab20eda4da99cee0e8734b0b9d69144e40a5895d3ac1