[INFO] fetching crate libprosic 0.7.3...
[INFO] checking libprosic-0.7.3 against try#ea663bba38739867a4b75ac820991b4f5d093c3b for pr-62262-1
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain ea663bba38739867a4b75ac820991b4f5d093c3b
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] c7c8c2c17859a82bc6de870d3e4c003f5ac2e136e8091d4b0bd6709adb2f434e
[INFO] running `"docker" "start" "-a" "c7c8c2c17859a82bc6de870d3e4c003f5ac2e136e8091d4b0bd6709adb2f434e"`
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
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[INFO] [stderr]    Compiling bindgen v0.36.1
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[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling lzma-sys v0.1.15
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[INFO] [stderr]     Checking itertools v0.5.10
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling fs-utils v1.1.1
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[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking memchr v2.2.1
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[INFO] [stderr]     Checking libz-sys v1.0.25
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[INFO] [stderr]     Checking rulinalg v0.2.2
[INFO] [stderr]     Checking regex v0.1.80
[INFO] [stderr]     Checking regex v1.3.1
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking env_logger v0.3.5
[INFO] [stderr]     Checking rusty-machine v0.4.4
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling rust-htslib v0.22.0
[INFO] [stderr]     Checking libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/call/pairwise.rs:62:20
[INFO] [stderr]    |
[INFO] [stderr] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stderr]    |                    ^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/call/pairwise.rs:70:21
[INFO] [stderr]    |
[INFO] [stderr] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stderr]    |                     ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/call/pairwise.rs:75:18
[INFO] [stderr]    |
[INFO] [stderr] 75 |             Some(try!(joint_model.pileup(
[INFO] [stderr]    |                  ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]    --> src/call/pairwise.rs:159:26
[INFO] [stderr]     |
[INFO] [stderr] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stderr]     |                          ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/model/sample.rs:76:17
[INFO] [stderr]    |
[INFO] [stderr] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stderr]    |                 ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/call/pairwise.rs:55:62
[INFO] [stderr]    |
[INFO] [stderr] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stderr]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call/pairwise.rs:116:21
[INFO] [stderr]     |
[INFO] [stderr] 116 | ) -> Result<(), Box<Error>>
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stderr]    |
[INFO] [stderr] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stderr]     |
[INFO] [stderr] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stderr]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stderr]    |
[INFO] [stderr] 35 | ) -> Result<(), Box<Error>>
[INFO] [stderr]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stderr]    |
[INFO] [stderr] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stderr]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stderr]    |
[INFO] [stderr] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stderr]     |
[INFO] [stderr] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:30:49
[INFO] [stderr]    |
[INFO] [stderr] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:56:49
[INFO] [stderr]    |
[INFO] [stderr] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:101:49
[INFO] [stderr]     |
[INFO] [stderr] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:169:49
[INFO] [stderr]     |
[INFO] [stderr] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/sample.rs:68:82
[INFO] [stderr]    |
[INFO] [stderr] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stderr]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:220:39
[INFO] [stderr]     |
[INFO] [stderr] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stderr]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:362:42
[INFO] [stderr]     |
[INFO] [stderr] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:363:34
[INFO] [stderr]     |
[INFO] [stderr] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stderr]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:409:42
[INFO] [stderr]     |
[INFO] [stderr] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:412:44
[INFO] [stderr]     |
[INFO] [stderr] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/mod.rs:275:41
[INFO] [stderr]     |
[INFO] [stderr] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stderr]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/mod.rs:416:42
[INFO] [stderr]     |
[INFO] [stderr] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/utils.rs:27:46
[INFO] [stderr]    |
[INFO] [stderr] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stderr]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:204:62
[INFO] [stderr]     |
[INFO] [stderr] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stderr]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:232:39
[INFO] [stderr]     |
[INFO] [stderr] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stderr]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:276:35
[INFO] [stderr]     |
[INFO] [stderr] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stderr]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:317:21
[INFO] [stderr]     |
[INFO] [stderr] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:367:30
[INFO] [stderr]     |
[INFO] [stderr] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stderr]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/model/evidence/reads.rs:335:1
[INFO] [stderr]     |
[INFO] [stderr] 335 | / lazy_static! {
[INFO] [stderr] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stderr] 337 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stderr]    |
[INFO] [stderr] 26 | / cached! {
[INFO] [stderr] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stderr] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stderr] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stderr] ...  |
[INFO] [stderr] 96 | |     }
[INFO] [stderr] 97 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/call/pairwise.rs:62:20
[INFO] [stderr]    |
[INFO] [stderr] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stderr]    |                    ^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/call/pairwise.rs:70:21
[INFO] [stderr]    |
[INFO] [stderr] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stderr]    |                     ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/call/pairwise.rs:75:18
[INFO] [stderr]    |
[INFO] [stderr] 75 |             Some(try!(joint_model.pileup(
[INFO] [stderr]    |                  ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]    --> src/call/pairwise.rs:159:26
[INFO] [stderr]     |
[INFO] [stderr] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stderr]     |                          ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'try': use the `?` operator instead
[INFO] [stderr]   --> src/model/sample.rs:76:17
[INFO] [stderr]    |
[INFO] [stderr] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stderr]    |                 ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/call/pairwise.rs:55:62
[INFO] [stderr]    |
[INFO] [stderr] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stderr]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/call/pairwise.rs:116:21
[INFO] [stderr]     |
[INFO] [stderr] 116 | ) -> Result<(), Box<Error>>
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stderr]    |
[INFO] [stderr] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stderr]     |
[INFO] [stderr] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stderr]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stderr]    |
[INFO] [stderr] 35 | ) -> Result<(), Box<Error>>
[INFO] [stderr]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stderr]    |
[INFO] [stderr] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stderr]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stderr]    |
[INFO] [stderr] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stderr]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stderr]     |
[INFO] [stderr] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:30:49
[INFO] [stderr]    |
[INFO] [stderr] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/evidence/reads.rs:56:49
[INFO] [stderr]    |
[INFO] [stderr] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:101:49
[INFO] [stderr]     |
[INFO] [stderr] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/evidence/reads.rs:169:49
[INFO] [stderr]     |
[INFO] [stderr] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stderr]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/model/sample.rs:68:82
[INFO] [stderr]    |
[INFO] [stderr] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stderr]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:220:39
[INFO] [stderr]     |
[INFO] [stderr] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stderr]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:362:42
[INFO] [stderr]     |
[INFO] [stderr] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:363:34
[INFO] [stderr]     |
[INFO] [stderr] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stderr]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:409:42
[INFO] [stderr]     |
[INFO] [stderr] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/sample.rs:412:44
[INFO] [stderr]     |
[INFO] [stderr] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stderr]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/mod.rs:275:41
[INFO] [stderr]     |
[INFO] [stderr] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stderr]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/model/mod.rs:416:42
[INFO] [stderr]     |
[INFO] [stderr] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stderr]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/utils.rs:27:46
[INFO] [stderr]    |
[INFO] [stderr] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stderr]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:204:62
[INFO] [stderr]     |
[INFO] [stderr] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stderr]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:232:39
[INFO] [stderr]     |
[INFO] [stderr] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stderr]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:276:35
[INFO] [stderr]     |
[INFO] [stderr] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stderr]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:317:21
[INFO] [stderr]     |
[INFO] [stderr] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stderr]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/utils.rs:367:30
[INFO] [stderr]     |
[INFO] [stderr] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stderr]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]    --> src/model/evidence/reads.rs:335:1
[INFO] [stderr]     |
[INFO] [stderr] 335 | / lazy_static! {
[INFO] [stderr] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stderr] 337 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred
[INFO] [stderr]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stderr]    |
[INFO] [stderr] 26 | / cached! {
[INFO] [stderr] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stderr] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stderr] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stderr] ...  |
[INFO] [stderr] 96 | |     }
[INFO] [stderr] 97 | | }
[INFO] [stderr]    | |_^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this warning originates in a macro outside of the current crate (in Nightly builds, run with -Z external-macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 20s
[INFO] running `"docker" "inspect" "c7c8c2c17859a82bc6de870d3e4c003f5ac2e136e8091d4b0bd6709adb2f434e"`
[INFO] running `"docker" "rm" "-f" "c7c8c2c17859a82bc6de870d3e4c003f5ac2e136e8091d4b0bd6709adb2f434e"`
[INFO] [stdout] c7c8c2c17859a82bc6de870d3e4c003f5ac2e136e8091d4b0bd6709adb2f434e