[INFO] fetching crate bio 0.28.2... [INFO] checking bio-0.28.2 against try#ea663bba38739867a4b75ac820991b4f5d093c3b for pr-62262-1 [INFO] extracting crate bio 0.28.2 into /workspace/builds/worker-10/source [INFO] validating manifest of crates.io crate bio 0.28.2 on toolchain ea663bba38739867a4b75ac820991b4f5d093c3b [INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate bio 0.28.2 [INFO] finished tweaking crates.io crate bio 0.28.2 [INFO] tweaked toml for crates.io crate bio 0.28.2 written to /workspace/builds/worker-10/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 48da49b8e263ce31d651f1d28473e71e89836757e9b39c772dc05e21862639ba [INFO] running `"docker" "start" "-a" "48da49b8e263ce31d651f1d28473e71e89836757e9b39c772dc05e21862639ba"` [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.28.2 (/opt/rustwide/workdir) [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking strum v0.13.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking aho-corasick v0.7.6 [INFO] [stderr] Checking csv-core v0.1.6 [INFO] [stderr] Checking bstr v0.2.8 [INFO] [stderr] Checking csv v1.1.1 [INFO] [stderr] Checking regex v1.3.1 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:142:13 [INFO] [stderr] | [INFO] [stderr] 142 | r#try!(self.reader.read_line(&mut self.line)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:159:13 [INFO] [stderr] | [INFO] [stderr] 159 | r#try!(self.reader.read_line(&mut self.line)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:249:21 [INFO] [stderr] | [INFO] [stderr] 249 | let index = r#try!(Index::new(fai)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:428:9 [INFO] [stderr] | [INFO] [stderr] 428 | r#try!(self.reader.seek(io::SeekFrom::Start(offset))); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:587:9 [INFO] [stderr] | [INFO] [stderr] 587 | r#try!(self.writer.write_all(b">")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:588:9 [INFO] [stderr] | [INFO] [stderr] 588 | r#try!(self.writer.write_all(id.as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:590:13 [INFO] [stderr] | [INFO] [stderr] 590 | r#try!(self.writer.write_all(b" ")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:591:13 [INFO] [stderr] | [INFO] [stderr] 591 | r#try!(self.writer.write_all(desc.unwrap().as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:593:9 [INFO] [stderr] | [INFO] [stderr] 593 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:594:9 [INFO] [stderr] | [INFO] [stderr] 594 | r#try!(self.writer.write_all(seq)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:595:9 [INFO] [stderr] | [INFO] [stderr] 595 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:108:9 [INFO] [stderr] | [INFO] [stderr] 108 | r#try!(self.reader.read_line(&mut self.line_buf)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:120:13 [INFO] [stderr] | [INFO] [stderr] 120 | r#try!(self.reader.read_line(&mut record.seq)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:121:13 [INFO] [stderr] | [INFO] [stderr] 121 | r#try!(self.reader.read_line(&mut self.line_buf)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:122:13 [INFO] [stderr] | [INFO] [stderr] 122 | r#try!(self.reader.read_line(&mut record.qual)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:310:9 [INFO] [stderr] | [INFO] [stderr] 310 | r#try!(self.writer.write_all(b"@")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:311:9 [INFO] [stderr] | [INFO] [stderr] 311 | r#try!(self.writer.write_all(id.as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:313:13 [INFO] [stderr] | [INFO] [stderr] 313 | r#try!(self.writer.write_all(b" ")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:314:13 [INFO] [stderr] | [INFO] [stderr] 314 | r#try!(self.writer.write_all(desc.unwrap().as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:316:9 [INFO] [stderr] | [INFO] [stderr] 316 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:317:9 [INFO] [stderr] | [INFO] [stderr] 317 | r#try!(self.writer.write_all(seq)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:318:9 [INFO] [stderr] | [INFO] [stderr] 318 | r#try!(self.writer.write_all(b"\n+\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:319:9 [INFO] [stderr] | [INFO] [stderr] 319 | r#try!(self.writer.write_all(qual)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:320:9 [INFO] [stderr] | [INFO] [stderr] 320 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:142:13 [INFO] [stderr] | [INFO] [stderr] 142 | r#try!(self.reader.read_line(&mut self.line)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:159:13 [INFO] [stderr] | [INFO] [stderr] 159 | r#try!(self.reader.read_line(&mut self.line)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:249:21 [INFO] [stderr] | [INFO] [stderr] 249 | let index = r#try!(Index::new(fai)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:428:9 [INFO] [stderr] | [INFO] [stderr] 428 | r#try!(self.reader.seek(io::SeekFrom::Start(offset))); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:587:9 [INFO] [stderr] | [INFO] [stderr] 587 | r#try!(self.writer.write_all(b">")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:588:9 [INFO] [stderr] | [INFO] [stderr] 588 | r#try!(self.writer.write_all(id.as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:590:13 [INFO] [stderr] | [INFO] [stderr] 590 | r#try!(self.writer.write_all(b" ")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:591:13 [INFO] [stderr] | [INFO] [stderr] 591 | r#try!(self.writer.write_all(desc.unwrap().as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:593:9 [INFO] [stderr] | [INFO] [stderr] 593 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:594:9 [INFO] [stderr] | [INFO] [stderr] 594 | r#try!(self.writer.write_all(seq)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fasta.rs:595:9 [INFO] [stderr] | [INFO] [stderr] 595 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:108:9 [INFO] [stderr] | [INFO] [stderr] 108 | r#try!(self.reader.read_line(&mut self.line_buf)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:120:13 [INFO] [stderr] | [INFO] [stderr] 120 | r#try!(self.reader.read_line(&mut record.seq)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:121:13 [INFO] [stderr] | [INFO] [stderr] 121 | r#try!(self.reader.read_line(&mut self.line_buf)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:122:13 [INFO] [stderr] | [INFO] [stderr] 122 | r#try!(self.reader.read_line(&mut record.qual)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:310:9 [INFO] [stderr] | [INFO] [stderr] 310 | r#try!(self.writer.write_all(b"@")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:311:9 [INFO] [stderr] | [INFO] [stderr] 311 | r#try!(self.writer.write_all(id.as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:313:13 [INFO] [stderr] | [INFO] [stderr] 313 | r#try!(self.writer.write_all(b" ")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:314:13 [INFO] [stderr] | [INFO] [stderr] 314 | r#try!(self.writer.write_all(desc.unwrap().as_bytes())); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:316:9 [INFO] [stderr] | [INFO] [stderr] 316 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:317:9 [INFO] [stderr] | [INFO] [stderr] 317 | r#try!(self.writer.write_all(seq)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:318:9 [INFO] [stderr] | [INFO] [stderr] 318 | r#try!(self.writer.write_all(b"\n+\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:319:9 [INFO] [stderr] | [INFO] [stderr] 319 | r#try!(self.writer.write_all(qual)); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'r#try': use the `?` operator instead [INFO] [stderr] --> src/io/fastq.rs:320:9 [INFO] [stderr] | [INFO] [stderr] 320 | r#try!(self.writer.write_all(b"\n")); [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:231:13 [INFO] [stderr] | [INFO] [stderr] 231 | shiftand.find_all(TEXT.iter()).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:241:13 [INFO] [stderr] | [INFO] [stderr] 241 | bndm.find_all(TEXT).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:251:13 [INFO] [stderr] | [INFO] [stderr] 251 | bom.find_all(TEXT).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:261:13 [INFO] [stderr] | [INFO] [stderr] 261 | horspool.find_all(TEXT).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:271:13 [INFO] [stderr] | [INFO] [stderr] 271 | kmp.find_all(TEXT.iter()).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.65s [INFO] running `"docker" "inspect" "48da49b8e263ce31d651f1d28473e71e89836757e9b39c772dc05e21862639ba"` [INFO] running `"docker" "rm" "-f" "48da49b8e263ce31d651f1d28473e71e89836757e9b39c772dc05e21862639ba"` [INFO] [stdout] 48da49b8e263ce31d651f1d28473e71e89836757e9b39c772dc05e21862639ba